Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0226 Ceratophyllum demersum HOM05D001000 ORTHO05D001896 3.4e-83 311.6 158 100.0
CDE06G0635 Ceratophyllum demersum HOM05D001000 ORTHO05D001896 1.2e-32 143.7 88 86.4
TAR633G2146 Trochodendron aralioides HOM05D001000 ORTHO05D001896 3.6e-24 115.5 83 72.3
Nn6g34762 Nelumbo nucifera HOM05D001000 ORTHO05D001896 2.3e-23 112.8 88 65.9
TAR369G0145 Trochodendron aralioides HOM05D001000 ORTHO05D001896 1.3e-21 107.1 83 67.5
TAR623G0951 Trochodendron aralioides HOM05D001000 ORTHO05D001896 4.9e-21 105.1 83 67.5
Potri.008G017500 Populus trichocarpa HOM05D001000 ORTHO05D001896 7.0e-20 101.3 83 65.1
TAR636G1824 Trochodendron aralioides HOM05D001000 ORTHO05D001896 7.0e-20 101.3 83 66.3
Sabra08G0011000 Salix brachista HOM05D001000 ORTHO05D001896 9.2e-20 100.9 83 63.9
Thecc.05G100500 Theobroma cacao HOM05D001000 ORTHO05D001896 1.6e-19 100.1 83 61.4
Potri.010G241500 Populus trichocarpa HOM05D001000 ORTHO05D001896 6.0e-19 98.2 83 62.7
Sabra10G0189000 Salix brachista HOM05D001000 ORTHO05D001896 1.7e-18 96.7 99 55.6
Duzib106G1160 Durio zibethinus HOM05D001000 ORTHO05D001896 1.1e-17 94.0 84 59.5
Potri.006G205500 Populus trichocarpa HOM05D001000 ORTHO05D001896 2.5e-17 92.8 86 61.6
Duzib114G0026 Durio zibethinus HOM05D001000 ORTHO05D001896 3.3e-17 92.4 84 59.5
CSS0021379 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 4.3e-17 92.0 84 54.8
CSS0028055 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 4.3e-17 92.0 84 54.8
Duzib128G1274 Durio zibethinus HOM05D001000 ORTHO05D001896 4.3e-17 92.0 84 58.3
Thecc.10G115800 Theobroma cacao HOM05D001000 ORTHO05D001896 4.3e-17 92.0 101 56.4
Sabra06G0158500 Salix brachista HOM05D001000 ORTHO05D001896 9.5e-17 90.9 86 58.1
Lj5g0023342 Lotus japonicus HOM05D001000 ORTHO05D001896 1.2e-16 90.5 87 55.2
Potri.016G072900 Populus trichocarpa HOM05D001000 ORTHO05D001896 1.6e-16 90.1 86 57.0
Cfa016666 Carpinus fangiana HOM05D001000 ORTHO05D001896 2.1e-16 89.7 83 56.6
Duzib093G1555 Durio zibethinus HOM05D001000 ORTHO05D001896 2.1e-16 89.7 87 57.5
Manes.07G085600 Manihot esculenta HOM05D001000 ORTHO05D001896 2.1e-16 89.7 88 56.8
Glyma.10G277300 Glycine max HOM05D001000 ORTHO05D001896 3.6e-16 89.0 86 55.8
Glyma.20G112400 Glycine max HOM05D001000 ORTHO05D001896 3.6e-16 89.0 86 55.8
Medtr1g111640 Medicago truncatula HOM05D001000 ORTHO05D001896 3.6e-16 89.0 87 54.0
VMungo0720G2559 Vigna mungo HOM05D001000 ORTHO05D001896 3.6e-16 89.0 86 55.8
Duzib128G0514 Durio zibethinus HOM05D001000 ORTHO05D001896 4.7e-16 88.6 84 59.5
Lalb_Chr06g0166271 Lupinus albus HOM05D001000 ORTHO05D001896 6.2e-16 88.2 86 58.1
Lalb_Chr21g0309071 Lupinus albus HOM05D001000 ORTHO05D001896 6.2e-16 88.2 86 57.0
Phvul.007G024100 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 6.2e-16 88.2 86 55.8
Cpa.g.sc104.65 Carica papaya HOM05D001000 ORTHO05D001896 1.1e-15 87.4 86 57.0
Haze_03473 Corylus avellana HOM05D001000 ORTHO05D001896 1.1e-15 87.4 83 59.0
Dinv31742 Davidia involucrata HOM05D001000 ORTHO05D001896 1.1e-15 87.4 84 56.0
TWI53G1968 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 1.1e-15 87.4 82 57.3
Cfa010537 Carpinus fangiana HOM05D001000 ORTHO05D001896 1.4e-15 87.0 80 60.0
TWI63G0964 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 1.4e-15 87.0 86 58.1
Aqoxy4G02690 Aquilegia oxysepala HOM05D001000 ORTHO05D001896 1.8e-15 86.7 84 58.3
Sabra16G0075800 Salix brachista HOM05D001000 ORTHO05D001896 1.8e-15 86.7 88 56.8
Haze_19677 Corylus avellana HOM05D001000 ORTHO05D001896 3.1e-15 85.9 85 56.5
Manes.08G031100 Manihot esculenta HOM05D001000 ORTHO05D001896 3.1e-15 85.9 91 51.6
PSO339G2273 Papaver somniferum HOM05D001000 ORTHO05D001896 4.0e-15 85.5 94 53.2
TWI74G0536 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 6.8e-15 84.7 82 57.3
Atru.chr8.1399 Acer truncatum HOM05D001000 ORTHO05D001896 8.9e-15 84.3 87 57.5
PSO384G5089 Papaver somniferum HOM05D001000 ORTHO05D001896 8.9e-15 84.3 95 52.6
CSS0030687 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 2.0e-14 83.2 94 51.1
CSS0043313 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 2.0e-14 83.2 94 51.1
MBI01_g25204_MAGBIO Magnolia biondii HOM05D001000 ORTHO05D001896 3.4e-14 82.4 85 55.3
Prupe.2G071500 Prunus persica HOM05D001000 ORTHO05D001896 3.4e-14 82.4 86 59.3
TPR.G26283 Trifolium pratense HOM05D001000 ORTHO05D001896 3.4e-14 82.4 91 51.6
QL04p047041 Quercus lobata HOM05D001000 ORTHO05D001896 4.4e-14 82.0 84 53.6
CiPaw.09G018500 Carya illinoinensis HOM05D001000 ORTHO05D001896 7.5e-14 81.3 84 51.2
QL07p037531 Quercus lobata HOM05D001000 ORTHO05D001896 7.5e-14 81.3 84 54.8
CiPaw.14G034400 Carya illinoinensis HOM05D001000 ORTHO05D001896 9.8e-14 80.9 83 54.2
Hma1.2p1_0457F.1_g156930 Hydrangea macrophylla HOM05D001000 ORTHO05D001896 1.7e-13 80.1 88 54.5
GSVIVG01034649001 Vitis vinifera HOM05D001000 ORTHO05D001896 2.9e-13 79.3 87 55.2
Psat6g230280 Pisum sativum HOM05D001000 ORTHO05D001896 4.9e-13 78.6 89 51.7
Gohir.A06G169700 Gossypium hirsutum HOM05D001000 ORTHO05D001896 6.4e-13 78.2 95 51.6
Gohir.D06G177300 Gossypium hirsutum HOM05D001000 ORTHO05D001896 8.3e-13 77.8 96 53.1
Gorai.N007900 Gossypium raimondii HOM05D001000 ORTHO05D001896 8.3e-13 77.8 96 53.1
Lj2C34T8 Lonicera japonica HOM05D001000 ORTHO05D001896 1.1e-12 77.4 85 52.9
Ciclev10012467m.g Citrus clementina HOM05D001000 ORTHO05D001896 1.4e-12 77.0 73 54.8
Cc06_g06330 Coffea canephora HOM05D001000 ORTHO05D001896 3.2e-12 75.9 77 54.5
Actinidia06689 Actinidia chinensis HOM05D001000 ORTHO05D001896 5.4e-12 75.1 117 43.6
Manes.09G048800 Manihot esculenta HOM05D001000 ORTHO05D001896 5.4e-12 75.1 82 53.7
Dinv12320 Davidia involucrata HOM05D001000 ORTHO05D001896 1.2e-11 73.9 94 47.9
CiPaw.13G042900 Carya illinoinensis HOM05D001000 ORTHO05D001896 1.6e-11 73.6 88 53.4
Eucgr.J00277 Eucalyptus grandis HOM05D001000 ORTHO05D001896 1.6e-11 73.6 91 52.7
Glyma.19G197700 Glycine max HOM05D001000 ORTHO05D001896 1.6e-11 73.6 92 50.0
CDE02G3480 Ceratophyllum demersum HOM05D001000 ORTHO05D001896 2.1e-11 73.2 84 50.0
Glyma.10G077700 Glycine max HOM05D001000 ORTHO05D001896 2.1e-11 73.2 89 49.4
Oeu033284.1 Olea europaea HOM05D001000 ORTHO05D001896 2.7e-11 72.8 91 49.5
CANSAT56G4195 Cannabis sativa HOM05D001000 ORTHO05D001896 4.6e-11 72.0 101 47.5
Cc02_g09500 Coffea canephora HOM05D001000 ORTHO05D001896 4.6e-11 72.0 94 51.1
Lalb_Chr25g0288111 Lupinus albus HOM05D001000 ORTHO05D001896 4.6e-11 72.0 86 46.5
Glyma.02G199500 Glycine max HOM05D001000 ORTHO05D001896 7.8e-11 71.2 90 48.9
Actinidia03843 Actinidia chinensis HOM05D001000 ORTHO05D001896 1.0e-10 70.9 91 48.4
CiPaw.10G015100 Carya illinoinensis HOM05D001000 ORTHO05D001896 1.0e-10 70.9 80 46.2
Dinv08594 Davidia involucrata HOM05D001000 ORTHO05D001896 1.3e-10 70.5 85 50.6
Nitab4.5_0001047g0050 Nicotiana tabacum HOM05D001000 ORTHO05D001896 3.0e-10 69.3 103 43.7
PGSC0003DMG400007601 Solanum tuberosum HOM05D001000 ORTHO05D001896 3.0e-10 69.3 101 39.6
Lj1g0011176 Lotus japonicus HOM05D001000 ORTHO05D001896 3.9e-10 68.9 98 50.0
Nitab4.5_0003787g0020 Nicotiana tabacum HOM05D001000 ORTHO05D001896 3.9e-10 68.9 104 43.3
Nitab4.5_0005214g0020 Nicotiana tabacum HOM05D001000 ORTHO05D001896 5.1e-10 68.6 101 43.6
THA.LOC104816470 Tarenaya hassleriana HOM05D001000 ORTHO05D001896 5.1e-10 68.6 97 45.4
Lalb_Chr20g0111501 Lupinus albus HOM05D001000 ORTHO05D001896 8.6e-10 67.8 86 52.3
Prupe.7G098500 Prunus persica HOM05D001000 ORTHO05D001896 8.6e-10 67.8 92 46.7
Oeu028656.1 Olea europaea HOM05D001000 ORTHO05D001896 1.1e-09 67.4 84 45.2
Cpa.g.sc54.14 Carica papaya HOM05D001000 ORTHO05D001896 1.5e-09 67.0 87 50.6
Glyma.03G200100 Glycine max HOM05D001000 ORTHO05D001896 1.9e-09 66.6 100 42.0
MSTRG.27557 Avicennia marina HOM05D001000 ORTHO05D001896 3.3e-09 65.9 98 44.9
CAN.G143.14 Capsicum annuum HOM05D001000 ORTHO05D001896 3.3e-09 65.9 109 39.4
CsaV3_5G035260 Cucumis sativus L. HOM05D001000 ORTHO05D001896 3.3e-09 65.9 91 44.0
Sopen11g002600 Solanum pennellii HOM05D001000 ORTHO05D001896 3.3e-09 65.9 105 38.1
ClCG05G021880 Citrullus lanatus HOM05D001000 ORTHO05D001896 4.3e-09 65.5 77 49.4
Oeu017709.1 Olea europaea HOM05D001000 ORTHO05D001896 4.3e-09 65.5 83 49.4
C02p02090 Brassica napus HOM05D001000 ORTHO05D001896 7.3e-09 64.7 88 50.0
Gohir.D04G095500 Gossypium hirsutum HOM05D001000 ORTHO05D001896 7.3e-09 64.7 96 45.8
Gorai.002G236500 Gossypium raimondii HOM05D001000 ORTHO05D001896 7.3e-09 64.7 85 45.9
Lj1P1044T15 Lonicera japonica HOM05D001000 ORTHO05D001896 7.3e-09 64.7 95 45.3
Lalb_Chr02g0154641 Lupinus albus HOM05D001000 ORTHO05D001896 7.3e-09 64.7 75 52.0
Aa31LG11G5640 Aethionema arabicum HOM05D001000 ORTHO05D001896 9.5e-09 64.3 99 44.4
Gohir.D01G192700 Gossypium hirsutum HOM05D001000 ORTHO05D001896 9.5e-09 64.3 86 45.3
BcaC03g13136 Brassica carinata HOM05D001000 ORTHO05D001896 1.2e-08 63.9 88 50.0
Gohir.A01G202700 Gossypium hirsutum HOM05D001000 ORTHO05D001896 1.2e-08 63.9 82 46.3
Gorai.009G398200 Gossypium raimondii HOM05D001000 ORTHO05D001896 1.2e-08 63.9 97 45.4
Thhalv10014455m.g Eutrema salsugineum HOM05D001000 ORTHO05D001896 1.6e-08 63.5 102 47.1
Medtr7g105780 Medicago truncatula HOM05D001000 ORTHO05D001896 1.6e-08 63.5 96 44.8
AT5G04820 Arabidopsis thaliana HOM05D001000 ORTHO05D001896 2.1e-08 63.2 104 43.3
Hma1.2p1_0064F.1_g034870 Hydrangea macrophylla HOM05D001000 ORTHO05D001896 2.1e-08 63.2 70 54.3
PGR044G1080 Punica granatum HOM05D001000 ORTHO05D001896 2.8e-08 62.8 89 49.4
MSTRG.9045 Avicennia marina HOM05D001000 ORTHO05D001896 3.6e-08 62.4 98 43.9
Ca_09039_v3 Cicer arietinum L. HOM05D001000 ORTHO05D001896 3.6e-08 62.4 80 48.8
Oeu034986.1 Olea europaea HOM05D001000 ORTHO05D001896 3.6e-08 62.4 73 47.9
HPP92_009776 Vanilla planifolia HOM05D001000 ORTHO05D001896 6.2e-08 61.6 71 57.7
VMungo1383G2300 Vigna mungo HOM05D001000 ORTHO05D001896 6.2e-08 61.6 98 42.9
Phvul.007G269900 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 8.1e-08 61.2 85 44.7
MSTRG.5883 Avicennia marina HOM05D001000 ORTHO05D001896 1.1e-07 60.8 66 54.5
Ciclev10030253m.g Citrus clementina HOM05D001000 ORTHO05D001896 1.1e-07 60.8 65 52.3
Peaxi162Scf00125g00042 Petunia axillaris HOM05D001000 ORTHO05D001896 1.1e-07 60.8 106 39.6
Solyc11g006670.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 1.1e-07 60.8 121 33.9
Carub.0006s0370 Capsella rubella HOM05D001000 ORTHO05D001896 1.4e-07 60.5 103 46.6
Peaxi162Scf00519g00047 Petunia axillaris HOM05D001000 ORTHO05D001896 1.4e-07 60.5 99 38.4
AL6G14480 Arabidopsis lyrata HOM05D001000 ORTHO05D001896 1.8e-07 60.1 101 46.5
VMungo0720G1203 Vigna mungo HOM05D001000 ORTHO05D001896 1.8e-07 60.1 85 44.7
CsaV3_6G004380 Cucumis sativus L. HOM05D001000 ORTHO05D001896 2.3e-07 59.7 93 41.9
Gohir.A04G061500 Gossypium hirsutum HOM05D001000 ORTHO05D001896 2.3e-07 59.7 95 43.2
Phvul.001G194000 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 2.3e-07 59.7 108 38.9
BcaC06g32189 Brassica carinata HOM05D001000 ORTHO05D001896 3.1e-07 59.3 106 42.5
C09p72060 Brassica napus HOM05D001000 ORTHO05D001896 3.1e-07 59.3 106 42.5
BolC9t59951H Brassica oleracea HOM05D001000 ORTHO05D001896 3.1e-07 59.3 106 42.5
MELO3C012340.2 Cucumis melo HOM05D001000 ORTHO05D001896 3.1e-07 59.3 70 47.1
CSS0030767 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D001896 4.0e-07 58.9 63 52.4
CARHR208460 Cardamine hirsuta HOM05D001000 ORTHO05D001896 4.0e-07 58.9 99 41.4
COL.COLO4_22648 Corchorus olitorius HOM05D001000 ORTHO05D001896 4.0e-07 58.9 88 45.5
Sed0016750 Sechium edule HOM05D001000 ORTHO05D001896 4.0e-07 58.9 78 47.4
Thecc.09G276400 Theobroma cacao HOM05D001000 ORTHO05D001896 4.0e-07 58.9 65 50.8
COL.COLO4_29618 Corchorus olitorius HOM05D001000 ORTHO05D001896 6.8e-07 58.2 115 41.7
THA.LOC104826961 Tarenaya hassleriana HOM05D001000 ORTHO05D001896 6.8e-07 58.2 96 40.6
MSTRG.26612 Avicennia marina HOM05D001000 ORTHO05D001896 1.2e-06 57.4 68 51.5
MELO3C019910.2 Cucumis melo HOM05D001000 ORTHO05D001896 1.2e-06 57.4 94 39.4
Duzib150G1445 Durio zibethinus HOM05D001000 ORTHO05D001896 1.2e-06 57.4 65 49.2
Potri.009G161600 Populus trichocarpa HOM05D001000 ORTHO05D001896 1.2e-06 57.4 89 40.4
A10p31390 Brassica napus HOM05D001000 ORTHO05D001896 1.5e-06 57.0 108 41.7
BraA10t45185Z Brassica rapa HOM05D001000 ORTHO05D001896 1.5e-06 57.0 108 41.7
ClCG08G008400 Citrullus lanatus HOM05D001000 ORTHO05D001896 1.5e-06 57.0 90 43.3
MD12G1034200 Malus domestica HOM05D001000 ORTHO05D001896 1.5e-06 57.0 102 39.2
MD07G1061900 Malus domestica HOM05D001000 ORTHO05D001896 2.0e-06 56.6 96 41.7
Duzib170G0167 Durio zibethinus HOM05D001000 ORTHO05D001896 2.6e-06 56.2 62 48.4
Migut.L01817 Erythranthe guttata HOM05D001000 ORTHO05D001896 2.6e-06 56.2 89 41.6
Gorai.007G366800 Gossypium raimondii HOM05D001000 ORTHO05D001896 2.6e-06 56.2 92 41.3
Lsat_1_v5_gn_2_105781 Lactuca sativa HOM05D001000 ORTHO05D010404 2.6e-06 56.2 97 36.1
ECA238G4651 Erigeron canadensis HOM05D001000 ORTHO05D001896 3.4e-06 55.8 109 35.8
Peaxi162Scf01662g00005 Petunia axillaris HOM05D001000 ORTHO05D001896 3.4e-06 55.8 83 43.4
Psat3g030320 Pisum sativum HOM05D001000 ORTHO05D001896 3.4e-06 55.8 79 43.0
Sed0011130 Sechium edule HOM05D001000 ORTHO05D001896 3.4e-06 55.8 87 41.4
Gohir.A07G112000 Gossypium hirsutum HOM05D001000 ORTHO05D001896 4.4e-06 55.5 82 47.6
Gohir.D11G336800 Gossypium hirsutum HOM05D001000 ORTHO05D001896 4.4e-06 55.5 92 41.3
MD14G1035600 Malus domestica HOM05D001000 ORTHO05D001896 4.4e-06 55.5 100 38.0
Dinv08409 Davidia involucrata HOM05D001000 ORTHO05D001896 5.8e-06 55.1 84 45.2
Nitab4.5_0000020g0390 Nicotiana tabacum HOM05D001000 ORTHO05D001896 5.8e-06 55.1 116 40.5
TPR.G20718 Trifolium pratense HOM05D001000 ORTHO05D001896 5.8e-06 55.1 94 42.6
Haze_23333 Corylus avellana HOM05D001000 ORTHO05D001896 7.6e-06 54.7 82 41.5
HanXRQChr02g0053511 Helianthus annuus HOM05D001000 ORTHO05D001896 7.6e-06 54.7 103 38.8
Lsat_1_v5_gn_9_47200 Lactuca sativa HOM05D001000 ORTHO05D001896 7.6e-06 54.7 110 36.4
MD07G1061800 Malus domestica HOM05D001000 ORTHO05D001896 7.6e-06 54.7 96 41.7
Sed0016928 Sechium edule HOM05D001000 ORTHO05D001896 7.6e-06 54.7 74 45.9
Sopen05g033660 Solanum pennellii HOM05D001000 ORTHO05D001896 7.6e-06 54.7 87 41.4
BolC4t27989H Brassica oleracea HOM05D001000 ORTHO05D001896 9.9e-06 54.3 66 48.5
Migut.J00681 Erythranthe guttata HOM05D001000 ORTHO05D001896 9.9e-06 54.3 62 53.2
Sabra09G0126300 Salix brachista HOM05D001000 ORTHO05D001896 9.9e-06 54.3 56 50.0
Sc06g0002400 Simmondsia chinensis HOM05D001000 ORTHO05D001896 9.9e-06 54.3 85 44.7
Sc20g0006600 Simmondsia chinensis HOM05D001000 ORTHO05D001896 9.9e-06 54.3 99 35.4
Solyc05g055220.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 9.9e-06 54.3 87 41.4


User provided reference genes

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