Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 8.3e-99 363.6 172 100.0
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.5e-55 219.2 174 64.9
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 2.5e-47 192.6 171 56.7
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.1e-46 189.5 177 57.1
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 4.8e-46 188.3 168 57.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.0e-45 185.3 172 55.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.5e-44 183.3 159 56.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.0e-44 183.0 159 56.0
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.4e-44 182.2 173 54.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.4e-44 182.2 171 55.6
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.5e-44 181.8 173 55.5
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.6e-44 181.0 167 55.7
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 7.6e-44 181.0 167 56.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 9.9e-44 180.6 173 56.6
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 164 56.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 4.9e-43 178.3 172 55.8
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 8.4e-43 177.6 169 54.4
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.1e-42 177.2 164 56.1
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.1e-42 177.2 166 56.0
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.4e-42 176.8 166 54.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.2e-42 175.6 164 55.5
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.5e-41 172.2 159 55.3
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 6.0e-41 171.4 165 54.5
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.9e-41 171.0 160 55.6
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.0e-40 169.1 173 50.9
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.0e-40 169.1 159 54.7
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.7e-40 167.9 178 52.8
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 8.7e-40 167.5 159 54.1
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 8.7e-40 167.5 159 54.1
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-39 167.2 146 56.8
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.5e-39 166.8 178 52.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.5e-39 166.8 172 52.9
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.5e-39 166.8 167 52.7
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.5e-39 166.8 159 54.1
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 4.3e-39 165.2 143 55.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 7.4e-39 164.5 159 56.0
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-38 163.3 164 51.8
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 8.2e-38 161.0 169 51.5
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.1e-37 160.6 230 42.2
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.1e-37 160.6 145 53.8
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.4e-37 160.2 159 49.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 5.3e-37 158.3 164 51.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.3e-37 158.3 164 51.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.3e-37 158.3 164 51.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 9.0e-37 157.5 173 47.4
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.2e-36 157.1 172 49.4
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.5e-36 156.8 160 53.1
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 5.8e-36 154.8 164 51.2
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.2e-35 152.9 169 49.1
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.2e-35 152.9 164 49.4
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.8e-35 152.1 163 49.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.8e-35 152.1 163 49.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 6.5e-35 151.4 159 50.3
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 8.4e-35 151.0 153 50.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 8.4e-35 151.0 153 50.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 8.4e-35 151.0 153 50.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.9e-34 149.8 159 47.8
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.5e-34 149.4 142 53.5
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.2e-34 148.7 169 46.2
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.2e-33 147.1 147 46.9
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.1e-33 146.4 173 46.2
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.7e-33 146.0 168 47.6
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.7e-33 146.0 164 48.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.7e-33 146.0 143 51.0
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.6e-33 145.2 171 45.6
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 7.9e-33 144.4 164 48.2
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 7.9e-33 144.4 164 48.2
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.0e-32 144.1 163 47.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.3e-32 143.7 159 47.2
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.3e-32 143.7 173 45.1
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.8e-32 143.3 164 47.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.3e-32 142.9 167 47.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.0e-32 142.5 159 48.4
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.9e-32 142.1 167 47.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 5.1e-32 141.7 171 45.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 6.7e-32 141.4 165 46.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 6.7e-32 141.4 150 47.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.1e-31 140.6 164 47.0
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.5e-31 140.2 149 47.0
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.9e-31 139.8 170 44.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.9e-31 139.8 174 46.0
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.9e-31 139.8 175 45.1
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.5e-31 139.4 160 48.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 3.3e-31 139.0 153 46.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.3e-31 138.7 173 44.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 7.4e-31 137.9 150 48.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 7.4e-31 137.9 152 45.4
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 9.7e-31 137.5 174 45.4
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.3e-30 137.1 164 45.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 165 46.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.3e-30 137.1 165 46.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.6e-30 136.7 173 43.4
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.6e-30 136.7 163 46.6
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 165 45.5
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 162 45.1
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.8e-30 135.2 164 44.5
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 4.8e-30 135.2 173 43.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 6.3e-30 134.8 164 44.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 6.3e-30 134.8 178 43.3
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 8.2e-30 134.4 165 46.1
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.4e-29 133.7 174 45.4
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.4e-29 133.7 174 45.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.4e-29 133.7 164 44.5
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.4e-29 133.7 159 46.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.4e-29 133.7 164 45.1
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.8e-29 133.3 82 70.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.4e-29 132.9 170 43.5
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.4e-29 132.9 164 43.9
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 4.1e-29 132.1 176 44.3
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 4.1e-29 132.1 176 44.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 9.0e-29 131.0 174 44.8
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.0e-28 129.8 174 44.3
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.5e-28 128.6 160 44.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 4.5e-28 128.6 170 42.9
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.6e-28 127.9 156 42.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 7.6e-28 127.9 173 41.0
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.9e-27 125.9 150 46.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 6.5e-27 124.8 178 41.0
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.5e-26 122.9 173 39.9
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-26 122.9 156 43.6
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-26 122.9 156 43.6
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.2e-26 122.5 159 42.8
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 4.2e-26 122.1 155 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 7.9e-25 117.9 112 49.1
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.9e-24 115.5 146 45.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.1e-23 114.0 85 61.2
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.1e-23 114.0 144 43.1
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 3.3e-23 112.5 158 39.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 7.4e-23 111.3 103 52.4
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 9.7e-23 110.9 176 38.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 3.7e-22 109.0 175 37.1
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.4e-21 107.1 158 36.7
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.8e-21 106.7 158 37.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.4e-21 106.3 160 38.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.4e-21 106.3 158 36.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.4e-21 106.3 158 36.7
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.1e-21 105.5 174 37.4
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 5.3e-21 105.1 174 37.4
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.6e-20 102.8 148 37.8
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 4.5e-20 102.1 129 45.0
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.4e-18 97.1 66 65.2
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.4e-18 97.1 132 37.9
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.2e-18 95.9 128 43.0
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 7.2e-18 94.7 126 42.9
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.6e-17 93.6 148 35.1
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 2.8e-14 82.8 88 46.6
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 3.7e-14 82.4 66 65.2
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 8.2e-14 81.3 65 60.0
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.5e-12 77.0 106 39.6
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 3.8e-11 72.4 101 40.6


User provided reference genes

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