Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 2.5e-75 285.4 148 100.0
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 9.9e-16 87.4 56 82.1
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 9.9e-16 87.4 56 80.4
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.9e-15 85.1 56 78.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.9e-15 85.1 56 78.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 8.3e-15 84.3 58 79.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.1e-14 84.0 55 81.8
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.9e-14 83.2 59 78.0
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.4e-14 82.8 50 90.0
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.4e-14 82.8 52 84.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.4e-14 82.8 50 86.0
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.2e-14 82.4 50 86.0
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.2e-14 82.4 56 78.6
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.2e-14 82.4 56 78.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 3.2e-14 82.4 58 74.1
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.2e-14 82.4 50 84.0
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.1e-14 82.0 67 70.1
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 4.1e-14 82.0 56 80.4
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.1e-14 82.0 56 78.6
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 4.1e-14 82.0 47 91.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 5.4e-14 81.6 53 81.1
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 5.4e-14 81.6 58 75.9
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.4e-14 81.6 58 75.9
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.4e-14 81.6 58 75.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 5.4e-14 81.6 52 80.8
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 5.4e-14 81.6 67 64.2
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 7.1e-14 81.3 53 79.2
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 7.1e-14 81.3 53 79.2
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 7.1e-14 81.3 49 85.7
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.1e-14 81.3 56 76.8
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 9.2e-14 80.9 55 76.4
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 9.2e-14 80.9 50 84.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 9.2e-14 80.9 63 65.1
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 9.2e-14 80.9 50 84.0
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.2e-13 80.5 50 84.0
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-13 80.5 50 82.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-13 80.5 49 83.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.2e-13 80.5 59 76.3
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.6e-13 80.1 53 79.2
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.6e-13 80.1 52 80.8
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.6e-13 80.1 56 80.4
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.1e-13 79.7 47 89.4
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.1e-13 79.7 54 77.8
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.1e-13 79.7 54 77.8
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.1e-13 79.7 47 87.2
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-13 79.7 52 80.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-13 79.7 58 74.1
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.1e-13 79.7 47 89.4
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.1e-13 79.7 50 86.0
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.1e-13 79.7 55 76.4
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.7e-13 79.3 53 77.4
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.7e-13 79.3 58 74.1
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-13 79.3 58 74.1
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-13 79.3 58 74.1
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-13 79.3 58 74.1
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.7e-13 79.3 54 81.5
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.7e-13 79.3 54 81.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 2.7e-13 79.3 54 77.8
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.7e-13 79.3 50 84.0
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.6e-13 78.6 58 72.4
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.6e-13 78.6 58 72.4
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.6e-13 78.6 58 72.4
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.0e-13 78.2 58 72.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.0e-13 78.2 60 73.3
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 6.0e-13 78.2 57 71.9
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-13 78.2 52 80.8
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-13 78.2 58 72.4
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 6.0e-13 78.2 58 75.9
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 6.0e-13 78.2 57 75.4
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 7.8e-13 77.8 50 82.0
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.0e-12 77.4 63 69.8
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.3e-12 77.0 128 46.9
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.3e-12 77.0 50 78.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.3e-12 77.0 68 66.2
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.3e-12 77.0 54 75.9
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.7e-12 76.6 50 78.0
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.7e-12 76.6 50 78.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.7e-12 76.6 57 73.7
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.7e-12 76.6 55 74.5
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.7e-12 76.6 51 76.5
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.7e-12 76.6 55 72.7
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 2.3e-12 76.3 55 76.4
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.3e-12 76.3 56 73.2
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 2.3e-12 76.3 58 70.7
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-12 76.3 58 70.7
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.3e-12 76.3 56 78.6
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 3.0e-12 75.9 55 74.5
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.0e-12 75.9 55 76.4
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.0e-12 75.9 60 73.3
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 3.0e-12 75.9 50 78.0
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 3.0e-12 75.9 55 74.5
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 3.9e-12 75.5 56 71.4
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 3.9e-12 75.5 50 80.0
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.9e-12 75.5 56 80.4
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 3.9e-12 75.5 48 81.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.9e-12 75.5 55 74.5
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.9e-12 75.5 56 73.2
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 5.1e-12 75.1 52 71.2
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.1e-12 75.1 55 74.5
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 5.1e-12 75.1 56 76.8
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 5.1e-12 75.1 55 74.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 6.6e-12 74.7 55 74.5
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 6.6e-12 74.7 55 74.5
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 6.6e-12 74.7 55 74.5
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 6.6e-12 74.7 55 74.5
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 6.6e-12 74.7 55 74.5
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 6.6e-12 74.7 50 78.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 8.6e-12 74.3 52 69.2
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 8.6e-12 74.3 52 69.2
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 8.6e-12 74.3 52 75.0
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 8.6e-12 74.3 51 72.5
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.1e-11 73.9 92 50.0
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.1e-11 73.9 56 71.4
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.5e-11 73.6 50 76.0
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.5e-11 73.6 52 76.9
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.9e-11 73.2 55 70.9
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.9e-11 73.2 56 75.0
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.5e-11 72.8 58 74.1
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.5e-11 72.8 50 74.0
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 3.3e-11 72.4 50 76.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.3e-11 72.4 50 76.0
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.3e-11 72.4 51 70.6
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.3e-11 72.0 55 69.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.3e-11 72.0 56 73.2
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 5.6e-11 71.6 55 70.9
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 5.6e-11 71.6 55 70.9
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 5.6e-11 71.6 55 70.9
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.6e-11 71.6 57 71.9
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 7.3e-11 71.2 61 67.2
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 7.3e-11 71.2 55 67.3
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.3e-11 71.2 56 67.9
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 7.3e-11 71.2 48 79.2
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 9.5e-11 70.9 55 70.9
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.2e-10 70.5 46 78.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.6e-10 70.1 57 68.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.1e-10 69.7 56 67.9
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 2.8e-10 69.3 56 67.9
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 6.2e-10 68.2 56 66.1
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 8.1e-10 67.8 53 66.0
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 8.1e-10 67.8 43 86.0
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.1e-09 67.4 50 70.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.1e-09 67.4 56 60.7
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.1e-09 67.4 56 67.9
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.4e-09 67.0 61 59.0
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.8e-09 66.6 60 60.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.4e-09 66.2 53 71.7
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.2e-09 65.1 45 75.6
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.2e-09 65.1 57 59.6
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 5.2e-09 65.1 50 68.0
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 8.9e-09 64.3 50 66.0
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.2e-08 63.9 42 83.3
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.0e-08 63.2 56 58.9
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.3e-07 60.5 69 52.2
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 3.8e-07 58.9 57 56.1
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.1e-06 57.4 53 52.8
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 1.9e-06 56.6 42 71.4
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 9.2e-06 54.3 41 61.0


User provided reference genes

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