Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.5e-136 489.6 250 100.0
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.1e-127 459.1 248 94.4
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.0e-45 186.8 302 41.4
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.1e-42 176.8 308 39.6
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 3.0e-41 172.9 276 40.6
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 7.4e-40 168.3 290 39.3
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.3e-39 167.5 287 40.1
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.3e-39 167.5 286 39.9
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.2e-39 166.8 288 39.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.8e-39 166.4 312 39.1
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.1e-38 164.5 292 39.4
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.8e-38 163.7 309 37.5
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.3e-38 162.2 290 39.0
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.2e-37 161.0 250 40.8
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.5e-37 160.6 290 37.2
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 2.0e-37 160.2 265 38.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 7.7e-37 158.3 291 39.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 7.7e-37 158.3 252 39.7
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.3e-36 157.5 274 41.6
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.2e-36 156.8 288 37.5
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 2.2e-36 156.8 249 41.0
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.8e-36 156.0 276 37.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 8.5e-36 154.8 275 37.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.4e-35 154.1 271 38.0
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 3.2e-35 152.9 289 36.7
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 7.2e-35 151.8 278 35.6
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 7.2e-35 151.8 295 37.6
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 9.4e-35 151.4 279 39.1
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.2e-34 151.0 281 38.1
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.7e-34 149.8 288 36.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 3.6e-34 149.4 261 36.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 4.7e-34 149.1 313 35.1
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 4.7e-34 149.1 284 36.3
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 7.9e-34 148.3 286 33.6
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 7.9e-34 148.3 274 38.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.4e-33 147.5 287 36.6
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.4e-33 147.5 267 36.0
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.3e-33 146.7 288 35.1
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.0e-33 146.4 268 36.2
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 5.2e-33 145.6 268 36.2
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 6.7e-33 145.2 289 34.9
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 8.8e-33 144.8 287 35.9
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 8.8e-33 144.8 254 35.8
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 8.8e-33 144.8 295 37.6
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.6e-32 143.3 284 32.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 4.4e-32 142.5 165 47.9
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 4.4e-32 142.5 164 46.3
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 5.7e-32 142.1 141 48.2
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 7.4e-32 141.7 280 33.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.7e-32 141.4 292 34.2
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.3e-31 141.0 264 36.0
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.8e-31 139.8 224 41.5
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 2.8e-31 139.8 292 34.2
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 3.7e-31 139.4 175 45.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.8e-31 139.0 280 34.6
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 6.3e-31 138.7 316 35.8
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 6.3e-31 138.7 296 36.5
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 8.2e-31 138.3 286 34.6
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.1e-30 137.9 295 34.6
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-30 137.9 304 33.9
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.1e-30 137.9 281 34.9
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.4e-30 137.5 161 47.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.8e-30 137.1 270 35.2
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.8e-30 137.1 157 47.1
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-30 137.1 156 44.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.4e-30 136.7 179 44.1
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.4e-30 136.7 306 33.0
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.4e-30 136.7 156 44.9
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 5.3e-30 135.6 323 33.1
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.3e-30 135.6 156 45.5
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 7.0e-30 135.2 313 33.2
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 7.0e-30 135.2 335 31.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.0e-30 135.2 156 44.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.1e-30 134.8 305 33.4
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 9.1e-30 134.8 164 45.1
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-29 134.4 151 49.7
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.6e-29 134.0 284 34.2
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.6e-29 134.0 156 46.8
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.6e-29 134.0 267 34.5
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.6e-29 134.0 282 36.2
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.6e-29 133.3 296 34.5
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.5e-29 132.9 280 33.9
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.9e-29 132.1 156 44.2
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.7e-29 131.7 184 40.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 7.7e-29 131.7 279 32.6
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.0e-28 131.3 166 45.2
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.0e-28 131.3 149 49.0
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-28 131.0 281 32.7
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.3e-28 131.0 156 44.9
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.3e-28 131.0 154 46.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.3e-28 131.0 242 37.2
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.3e-28 131.0 156 45.5
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.7e-28 130.6 173 44.5
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.9e-28 129.8 160 46.2
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 6.5e-28 128.6 328 29.3
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 8.5e-28 128.3 156 43.6
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.1e-27 127.9 153 49.0
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.5e-27 127.5 242 36.4
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.5e-27 127.5 242 36.4
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.2e-27 126.3 160 45.0
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.2e-27 126.3 224 37.5
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.2e-27 125.9 334 30.8
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.2e-27 125.2 155 41.9
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 9.4e-27 124.8 336 31.2
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.2e-26 124.4 271 33.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.1e-26 123.6 156 42.3
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.6e-26 122.9 285 33.7
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 4.7e-26 122.5 241 36.5
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 4.7e-26 122.5 288 31.6
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 4.7e-26 122.5 153 47.7
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 4.7e-26 122.5 274 32.8
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.7e-26 122.5 273 33.3
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.7e-26 122.5 187 40.1
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.0e-25 121.3 289 30.4
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.0e-25 121.3 289 30.4
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.4e-25 120.9 334 28.4
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.8e-25 120.6 129 45.7
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.8e-25 120.6 250 33.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.8e-25 120.6 135 43.7
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.3e-25 120.2 257 33.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.0e-25 119.4 141 44.7
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 8.8e-25 118.2 166 37.3
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.0e-24 117.1 277 34.3
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-24 117.1 286 32.2
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.6e-24 116.7 198 33.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 3.3e-24 116.3 282 33.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.3e-23 114.4 163 39.3
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.3e-23 114.4 163 39.3
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 1.7e-23 114.0 297 30.0
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 6.3e-23 112.1 245 33.1
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 4.1e-22 109.4 251 35.9
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.3e-22 109.0 245 31.8
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 7.0e-22 108.6 220 34.5
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 7.0e-22 108.6 236 33.9
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.2e-21 107.8 174 39.7
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.7e-21 106.7 260 34.2
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 5.0e-20 102.4 237 35.4
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 8.5e-20 101.7 221 33.0
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 4.2e-19 99.4 100 47.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.2e-19 98.6 251 32.3
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-18 96.7 87 57.5
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 8.0e-18 95.1 208 33.2
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-17 92.0 118 45.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 6.8e-17 92.0 83 55.4
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.2e-16 91.3 242 30.6
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.3e-15 87.8 216 32.4
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.0e-14 82.0 174 30.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.6e-13 80.9 80 45.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.7e-13 78.6 262 30.5
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 7.7e-13 78.6 259 27.0
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.9e-11 73.9 67 47.8
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.4e-09 67.8 74 40.5
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 4.0e-09 66.2 174 31.0
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 8.8e-09 65.1 116 36.2
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.8e-07 60.1 113 38.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.3e-07 58.5 94 38.3


User provided reference genes

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