Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0175 Ceratophyllum demersum HOM05D003992 ORTHO05D004329 2.6e-220 768.5 394 100.0
CDE02G3040 Ceratophyllum demersum HOM05D003992 ORTHO05D004329 1.4e-181 639.8 485 73.4
Nn5g29561 Nelumbo nucifera HOM05D003992 ORTHO05D004329 5.7e-87 325.5 488 42.2
TAR628G0682 Trochodendron aralioides HOM05D003992 ORTHO05D004329 9.5e-82 308.1 484 43.0
MBI16_g37748_MAGBIO Magnolia biondii HOM05D003992 ORTHO05D004329 3.6e-81 306.2 503 43.1
TAR376G0310 Trochodendron aralioides HOM05D003992 ORTHO05D004329 2.0e-79 300.4 491 42.6
Dinv39410 Davidia involucrata HOM05D003992 ORTHO05D004329 5.7e-79 298.9 492 41.1
Rhsim07G0237600 Rhododendron simsii HOM05D003992 ORTHO05D004329 1.7e-78 297.4 518 39.2
Nn1g05048 Nelumbo nucifera HOM05D003992 ORTHO05D004329 4.5e-76 289.3 491 38.9
Haze_17980 Corylus avellana HOM05D003992 ORTHO05D004329 1.1e-74 284.6 487 40.5
Aqoxy5G01665 Aquilegia oxysepala HOM05D003992 ORTHO05D004329 1.9e-74 283.9 491 39.9
Cfa018143 Carpinus fangiana HOM05D003992 ORTHO05D004329 1.9e-74 283.9 487 39.2
EL10Ac1g01750 Beta vulgaris HOM05D003992 ORTHO05D004329 1.6e-73 280.8 486 40.9
Duzib116G0511 Durio zibethinus HOM05D003992 ORTHO05D004329 1.6e-73 280.8 490 38.8
QL02p008027 Quercus lobata HOM05D003992 ORTHO05D004329 1.6e-73 280.8 490 39.2
AUR62038829 Chenopodium quinoa HOM05D003992 ORTHO05D004329 3.6e-73 279.6 481 41.2
Actinidia15319 Actinidia chinensis HOM05D003992 ORTHO05D004329 6.1e-73 278.9 487 39.4
AUR62034944 Chenopodium quinoa HOM05D003992 ORTHO05D004329 1.4e-72 277.7 486 40.9
Duzib041G0176 Durio zibethinus HOM05D003992 ORTHO05D004329 1.8e-72 277.3 490 39.2
Duzib093G1886 Durio zibethinus HOM05D003992 ORTHO05D004329 1.8e-72 277.3 490 39.4
Prupe.1G380700 Prunus persica HOM05D003992 ORTHO05D004329 1.8e-72 277.3 488 38.5
Actinidia22553 Actinidia chinensis HOM05D003992 ORTHO05D004329 3.0e-72 276.6 490 39.0
RcHm_v2.0_Chr6g0300861 Rosa chinensis HOM05D003992 ORTHO05D004329 3.0e-72 276.6 497 39.2
Sabra02G0199100 Salix brachista HOM05D003992 ORTHO05D004329 3.0e-72 276.6 512 38.5
Manes.15G188300 Manihot esculenta HOM05D003992 ORTHO05D004329 6.8e-72 275.4 489 38.2
FvH4_2g39920 Fragaria vesca HOM05D003992 ORTHO05D004329 2.6e-71 273.5 494 38.5
Gohir.A01G116100 Gossypium hirsutum HOM05D003992 ORTHO05D004329 3.4e-71 273.1 490 38.0
Sopen04g033820 Solanum pennellii HOM05D003992 ORTHO05D004329 4.4e-71 272.7 485 38.8
CiPaw.15G077300 Carya illinoinensis HOM05D003992 ORTHO05D004329 9.8e-71 271.6 490 40.8
CANSAT25G0428 Cannabis sativa HOM05D003992 ORTHO05D004329 1.3e-70 271.2 488 38.7
Solyc04g080240.4 Solanum lycopersicum HOM05D003992 ORTHO05D004329 1.3e-70 271.2 485 38.6
vmacro04519 Vaccinium macrocarpon HOM05D003992 ORTHO05D004329 1.3e-70 271.2 493 38.1
FAN20G1022 Fragaria x ananassa HOM05D003992 ORTHO05D004329 1.7e-70 270.8 489 39.9
arahy.Tifrunner.gnm1.ann1.L0KAFE Arachis hypogaea HOM05D003992 ORTHO05D004329 2.2e-70 270.4 492 38.2
arahy.Tifrunner.gnm1.ann1.P6P9CF Arachis hypogaea HOM05D003992 ORTHO05D004329 2.2e-70 270.4 492 38.2
FAN15G3622 Fragaria x ananassa HOM05D003992 ORTHO05D004329 2.2e-70 270.4 489 39.5
FAN27G1736 Fragaria x ananassa HOM05D003992 ORTHO05D004329 3.7e-70 269.6 494 38.9
PGSC0003DMG400005140 Solanum tuberosum HOM05D003992 ORTHO05D004329 3.7e-70 269.6 487 38.4
Thecc.08G025200 Theobroma cacao HOM05D003992 ORTHO05D004329 3.7e-70 269.6 490 38.8
CAN.G1126.53 Capsicum annuum HOM05D003992 ORTHO05D004329 4.9e-70 269.2 488 37.7
Gohir.D01G104600 Gossypium hirsutum HOM05D003992 ORTHO05D004329 1.9e-69 267.3 487 38.2
COL.COLO4_26331 Corchorus olitorius HOM05D003992 ORTHO05D004329 2.4e-69 266.9 489 38.7
Gohir.D01G104400 Gossypium hirsutum HOM05D003992 ORTHO05D004329 2.4e-69 266.9 489 38.4
Gorai.002G128600 Gossypium raimondii HOM05D003992 ORTHO05D004329 2.4e-69 266.9 487 38.2
Potri.002G262300 Populus trichocarpa HOM05D003992 ORTHO05D004329 4.1e-69 266.2 489 38.7
CSS0034936 Camellia sinensis var. sinensis HOM05D003992 ORTHO05D004329 9.2e-69 265.0 484 39.5
Ciclev10000013m.g Citrus clementina HOM05D003992 ORTHO05D004329 9.2e-69 265.0 486 38.5
Gorai.002G128500 Gossypium raimondii HOM05D003992 ORTHO05D004329 1.6e-68 264.2 490 38.2
Gohir.A01G116200 Gossypium hirsutum HOM05D003992 ORTHO05D004329 3.5e-68 263.1 487 38.0
CiPaw.16G055800 Carya illinoinensis HOM05D003992 ORTHO05D004329 4.6e-68 262.7 490 38.8
Dinv36071 Davidia involucrata HOM05D003992 ORTHO05D004329 4.6e-68 262.7 490 39.6
TWI36G1026 Tripterygium wilfordii HOM05D003992 ORTHO05D004329 6.0e-68 262.3 491 38.7
VMungo0647G1645 Vigna mungo HOM05D003992 ORTHO05D004329 7.8e-68 261.9 492 38.6
DCAR_020969 Daucus carota HOM05D003992 ORTHO05D004329 3.0e-67 260.0 487 37.8
Glyma.17G249900 Glycine max HOM05D003992 ORTHO05D004329 1.1e-66 258.1 501 37.1
PSO541G1688 Papaver somniferum HOM05D003992 ORTHO05D004329 1.1e-66 258.1 493 39.6
Sc02g0006250 Simmondsia chinensis HOM05D003992 ORTHO05D004329 2.5e-66 256.9 486 37.7
Cc10_g03010 Coffea canephora HOM05D003992 ORTHO05D004329 3.3e-66 256.5 480 38.1
Medtr1g022145 Medicago truncatula HOM05D003992 ORTHO05D004329 3.3e-66 256.5 501 36.7
Phvul.001G015100 Phaseolus vulgaris HOM05D003992 ORTHO05D004329 5.6e-66 255.8 491 38.5
Eucgr.F01902 Eucalyptus grandis HOM05D003992 ORTHO05D004329 9.5e-66 255.0 497 37.2
Ah.11g043110 Amaranthus hybridus HOM05D003992 ORTHO05D004329 1.6e-65 254.2 485 39.2
Lj5g0026255 Lotus japonicus HOM05D003992 ORTHO05D004329 2.1e-65 253.8 494 37.0
PSO675G6685 Papaver somniferum HOM05D003992 ORTHO05D004329 2.8e-65 253.4 492 39.2
SalBow8G0890 Salvia bowleyana HOM05D003992 ORTHO05D004329 3.6e-65 253.1 485 36.9
TPR.G29754 Trifolium pratense HOM05D003992 ORTHO05D004329 4.7e-65 252.7 482 37.3
MD15G1031200 Malus domestica HOM05D003992 ORTHO05D004329 1.8e-64 250.8 487 36.3
Nitab4.5_0009105g0010 Nicotiana tabacum HOM05D003992 ORTHO05D004329 1.8e-64 250.8 509 36.1
Hund26579 Selenicereus undatus HOM05D003992 ORTHO05D004329 3.1e-64 250.0 498 37.3
Nitab4.5_0000110g0560 Nicotiana tabacum HOM05D003992 ORTHO05D004329 4.0e-64 249.6 443 38.4
PGR083G2608 Punica granatum HOM05D003992 ORTHO05D004329 5.2e-64 249.2 311 48.6
Sc15g0006910 Simmondsia chinensis HOM05D003992 ORTHO05D004329 4.4e-63 246.1 483 38.3
Peaxi162Scf00690g00025 Petunia axillaris HOM05D003992 ORTHO05D004329 2.9e-62 243.4 486 36.2
ATR0733G229 Amborella trichopoda HOM05D003992 ORTHO05D004329 1.9e-61 240.7 495 36.8
MELO3C010934.2 Cucumis melo HOM05D003992 ORTHO05D004329 2.4e-61 240.4 484 38.4
MD08G1034300 Malus domestica HOM05D003992 ORTHO05D004329 4.1e-61 239.6 488 35.5
Lalb_Chr14g0369191 Lupinus albus HOM05D003992 ORTHO05D004329 5.4e-61 239.2 502 36.5
MSTRG.1284 Avicennia marina HOM05D003992 ORTHO05D004329 7.0e-61 238.8 477 36.3
Sed0014403 Sechium edule HOM05D003992 ORTHO05D004329 9.2e-61 238.4 480 37.7
VMungo1309G1132 Vigna mungo HOM05D003992 ORTHO05D004329 7.8e-60 235.3 488 36.1
Psat0s3731g0120 Pisum sativum HOM05D003992 ORTHO05D004329 3.0e-59 233.4 492 37.4
Lalb_Chr22g0355521 Lupinus albus HOM05D003992 ORTHO05D004329 8.6e-59 231.9 490 37.1
Aqoxy6G01079 Aquilegia oxysepala HOM05D003992 ORTHO05D004329 3.3e-58 229.9 476 36.1
CsaV3_2G028620 Cucumis sativus L. HOM05D003992 ORTHO05D004329 7.3e-58 228.8 484 37.6
Glyma.04G032700 Glycine max HOM05D003992 ORTHO05D004329 1.2e-57 228.0 486 35.6
Lj1g0007825 Lotus japonicus HOM05D003992 ORTHO05D004329 1.2e-57 228.0 489 37.2
DCAR_019527 Daucus carota HOM05D003992 ORTHO05D004329 1.6e-57 227.6 455 38.7
Glyma.06G032600 Glycine max HOM05D003992 ORTHO05D004329 6.2e-57 225.7 490 36.9
Oeu016746.1 Olea europaea HOM05D003992 ORTHO05D004329 8.1e-57 225.3 301 47.5
Lalb_Chr24g0399001 Lupinus albus HOM05D003992 ORTHO05D004329 1.4e-56 224.6 486 36.2
Migut.C00714 Erythranthe guttata HOM05D003992 ORTHO05D004329 1.8e-56 224.2 290 46.2
ClCG08G015190 Citrullus lanatus HOM05D003992 ORTHO05D004329 8.9e-56 221.9 509 37.3
Phvul.009G057400 Phaseolus vulgaris HOM05D003992 ORTHO05D004329 8.9e-56 221.9 490 35.5
Atru.chr13.498 Acer truncatum HOM05D003992 ORTHO05D004329 1.2e-55 221.5 306 45.8
Sed0028038 Sechium edule HOM05D003992 ORTHO05D004329 2.6e-55 220.3 490 35.3
SGA_v2.0_scaffold48G18076 Striga asiatica HOM05D003992 ORTHO05D004329 2.6e-55 220.3 470 35.5
ECA247G1453 Erigeron canadensis HOM05D003992 ORTHO05D004329 7.5e-55 218.8 481 36.2
Aa31LG9G13060 Aethionema arabicum HOM05D003992 ORTHO05D004329 3.7e-54 216.5 484 36.2
Carub.0008s0582 Capsella rubella HOM05D003992 ORTHO05D004329 3.7e-54 216.5 486 36.8
Cpa.g.sc64.81 Carica papaya HOM05D003992 ORTHO05D004329 4.9e-54 216.1 258 48.4
AL8G17880 Arabidopsis lyrata HOM05D003992 ORTHO05D004329 6.4e-54 215.7 487 36.1
CARHR181120 Cardamine hirsuta HOM05D003992 ORTHO05D004329 1.9e-53 214.2 496 35.7
ECA232G3773 Erigeron canadensis HOM05D003992 ORTHO05D004329 4.1e-53 213.0 479 36.3
AT5G42950 Arabidopsis thaliana HOM05D003992 ORTHO05D004329 7.1e-53 212.2 496 36.3
TPR.G12352 Trifolium pratense HOM05D003992 ORTHO05D004329 9.2e-53 211.8 485 36.7
Sp2g07700 Schrenkiella parvula HOM05D003992 ORTHO05D004329 2.7e-52 210.3 479 35.7
HPP92_018700 Vanilla planifolia HOM05D003992 ORTHO05D004329 2.5e-50 203.8 452 36.1
Zm00001eb299670 Zea mays HOM05D003992 ORTHO05D004329 3.3e-50 203.4 460 34.6
Thhalv10003129m.g Eutrema salsugineum HOM05D003992 ORTHO05D004329 3.6e-49 199.9 484 33.1
THA.LOC104814159 Tarenaya hassleriana HOM05D003992 ORTHO05D004329 3.6e-49 199.9 491 34.6
unitig_85.g27238 Utricularia gibba HOM05D003992 ORTHO05D004329 1.8e-48 197.6 462 33.5
HPP92_024939 Vanilla planifolia HOM05D003992 ORTHO05D004329 2.0e-47 194.1 270 44.1
Lsat_1_v5_gn_4_117960 Lactuca sativa HOM05D003992 ORTHO05D004329 5.8e-47 192.6 275 45.8
HanXRQChr16g0498501 Helianthus annuus HOM05D003992 ORTHO05D004329 7.6e-47 192.2 465 35.7
THA.LOC104814161 Tarenaya hassleriana HOM05D003992 ORTHO05D004329 9.9e-47 191.8 489 34.2
C09p25510 Brassica napus HOM05D003992 ORTHO05D004329 1.3e-46 191.4 478 34.7
BolC9t55453H Brassica oleracea HOM05D003992 ORTHO05D004329 1.3e-46 191.4 478 34.7
BcaB07g31029 Brassica carinata HOM05D003992 ORTHO05D004329 1.7e-46 191.0 443 35.9
BcaC04g21954 Brassica carinata HOM05D003992 ORTHO05D004329 1.7e-46 191.0 478 34.7
Lalb_Chr11g0062361 Lupinus albus HOM05D003992 ORTHO05D004329 3.8e-46 189.9 492 32.7
A09p20120 Brassica napus HOM05D003992 ORTHO05D004329 9.2e-45 185.3 447 36.2
BraA09t37625Z Brassica rapa HOM05D003992 ORTHO05D004329 1.6e-44 184.5 447 36.0
HanXRQChr16g0507581 Helianthus annuus HOM05D003992 ORTHO05D004329 6.6e-43 179.1 450 34.9
GSVIVG01009695001 Vitis vinifera HOM05D003992 ORTHO05D004329 1.2e-41 174.9 376 36.7
SGA_v2.0_scaffold24G10232 Striga asiatica HOM05D003992 ORTHO05D004329 5.3e-40 169.5 459 33.1
Ca_06587_v3 Cicer arietinum L. HOM05D003992 ORTHO05D004329 5.6e-34 149.4 129 61.2
Lj4C785T10 Lonicera japonica HOM05D003992 ORTHO05D004329 5.3e-32 142.9 129 58.1
TAR628G0639 Trochodendron aralioides HOM05D000542 ORTHO05D000202 2.0e-31 141.0 121 63.6
HPP92_024930 Vanilla planifolia HOM05D003992 ORTHO05D004329 4.2e-29 133.3 319 33.9
HPP92_018813 Vanilla planifolia HOM05D003992 ORTHO05D004329 1.2e-28 131.7 128 57.0
Psat6g006520 Pisum sativum HOM05D003992 ORTHO05D004329 4.8e-25 119.8 360 30.8
CSS0024556 Camellia sinensis var. sinensis HOM05D003992 ORTHO05D004329 6.2e-25 119.4 345 31.9
SHI08161 Sapria himalayana HOM05D003992 ORTHO05D004329 2.6e-23 114.0 131 48.9
Actinidia29828 Actinidia chinensis HOM05D003992 ORTHO05D004329 4.6e-20 103.2 336 28.9
SMO358G0406 Selaginella moellendorffii HOM05D003992 ORTHO05D004329 2.1e-17 94.4 276 32.2
Glyma.14G075800 Glycine max HOM05D003992 ORTHO05D004329 1.2e-15 88.6 343 27.7
Lj4C41G7 Lonicera japonica HOM05D003992 ORTHO05D004329 8.4e-14 82.4 133 41.4
Mapoly0013s0059 Marchantia polymorpha HOM05D003992 ORTHO05D004329 1.1e-13 82.0 200 32.5
Ca_13352_v3 Cicer arietinum L. HOM05D003992 ORTHO05D004329 7.1e-13 79.3 276 27.5
Lj4C785T11 Lonicera japonica HOM05D003992 ORTHO05D004329 7.9e-12 75.9 270 27.4
unitig_578.g16732 Utricularia gibba HOM05D003992 ORTHO05D004329 1.6e-09 68.2 129 35.7
SMO358G0551 Selaginella moellendorffii HOM05D003068 ORTHO05D003444 1.1e-08 65.5 150 29.3
CBR_g20442 Chara braunii HOM05D003992 ORTHO05D004329 6.9e-08 62.8 205 26.3
AagrBONN_evm.TU.Sc2ySwM_117.3307 Anthoceros agrestis HOM05D003068 ORTHO05D003444 1.0e-06 58.9 185 31.4
Pp3c4_9300 Physcomitrium patens HOM05D003992 ORTHO05D004329 2.2e-06 57.8 224 30.8
HPP92_018812 Vanilla planifolia HOM05D003992 ORTHO05D004329 3.8e-06 57.0 263 28.1
Solyc05g015920.3 Solanum lycopersicum HOM05D003068 ORTHO05D003444 5.0e-06 56.6 48 54.2
Solyc05g015930.4 Solanum lycopersicum HOM05D003068 ORTHO05D003444 5.0e-06 56.6 48 54.2
Sopen05g012000 Solanum pennellii HOM05D003068 ORTHO05D003444 5.0e-06 56.6 48 54.2
Sopen05g012020 Solanum pennellii HOM05D003068 ORTHO05D003444 5.0e-06 56.6 48 54.2
Atru.chr11.2377 Acer truncatum HOM05D003068 ORTHO05D003444 6.5e-06 56.2 63 49.2
SEGI_26744 Sequoiadendron giganteum HOM05D003992 ORTHO05D004329 6.5e-06 56.2 277 25.3
Actinidia30621 Actinidia chinensis HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 71.1
Ah.02g131010 Amaranthus hybridus HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 71.1
FvH4_4g23270 Fragaria vesca HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 68.4
FAN07G2860 Fragaria x ananassa HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 68.4
FAN12G3359 Fragaria x ananassa HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 68.4
PGR102G3269 Punica granatum HOM05D003068 ORTHO05D003444 8.5e-06 55.8 47 55.3
Hund06111 Selenicereus undatus HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 71.1
Hund25484 Selenicereus undatus HOM05D003068 ORTHO05D003444 8.5e-06 55.8 38 71.1


User provided reference genes

Program Settings