Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 2038.5 1036 100.0
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1471.8 1010 77.4
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1225.3 1116 59.1
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1219.9 1087 59.1
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1205.3 1086 57.5
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1191.0 1085 58.0
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 1088 56.6
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1181.4 1088 57.4
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1167.5 1103 56.8
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1166.8 1087 56.1
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1150.2 1098 56.1
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1147.1 1092 55.8
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1143.6 1091 55.9
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1142.5 1166 53.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1142.5 1103 54.3
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1134.0 1095 55.3
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1133.2 1084 55.9
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1124.0 1128 55.4
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 1100 54.6
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1119.4 1088 55.0
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1115.9 1153 51.7
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1113.6 1085 53.9
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1110.9 1087 54.8
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1109.0 1089 53.4
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1107.8 1088 54.4
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1107.8 1089 54.5
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1105.1 1112 53.7
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1104.4 1086 54.3
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1104.0 1100 54.6
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 1101 54.1
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 1089 54.5
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1094.3 1094 53.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1094.0 1094 52.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1089.7 1097 53.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1085.1 1086 53.0
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1084.7 1082 54.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1083.6 1087 53.1
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1082.8 1085 53.3
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1082.8 1105 52.6
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1081.6 1092 52.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1080.1 1086 52.9
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1079.7 1084 52.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1078.5 1085 53.5
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1078.5 1082 53.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1077.4 1084 52.6
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1077.0 1082 53.5
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1076.6 1088 52.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1076.2 1072 54.1
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 1.2e-309 1066.6 1090 53.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 1.6e-309 1066.2 1102 52.8
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 1.6e-309 1066.2 1162 50.1
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 5.9e-309 1064.3 1121 52.4
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 1.2e-306 1056.6 1092 53.5
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 8.0e-306 1053.9 1092 53.5
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 1.0e-305 1053.5 1072 52.5
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 1.8e-305 1052.7 1101 51.7
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.8e-305 1052.7 1097 53.3
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.0e-305 1052.0 1096 53.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 2.0e-304 1049.3 1101 51.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 3.4e-304 1048.5 1094 53.6
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 7.5e-304 1047.3 1091 52.2
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.9e-303 1044.6 1092 52.9
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 4.9e-303 1044.6 1097 51.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 5.4e-302 1041.2 1092 51.5
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 1.6e-301 1039.6 1084 51.7
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 2.7e-301 1038.9 1091 51.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 7.8e-301 1037.3 1084 51.8
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 1.7e-300 1036.2 1095 50.5
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 7.3e-299 1030.8 1096 51.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 4.7e-298 1028.1 1095 51.9
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.4e-297 1026.5 1094 51.2
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 3.1e-297 1025.4 958 56.9
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 5.2e-297 1024.6 1096 51.8
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 8.9e-297 1023.8 1093 51.9
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 1.5e-296 1023.1 1104 51.6
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 1.5e-296 1023.1 1104 51.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 7.5e-296 1020.8 1144 49.6
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 9.8e-296 1020.4 1100 51.7
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-295 1019.2 1091 52.0
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.2e-295 1019.2 1083 51.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.4e-294 1015.8 1105 51.4
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 3.2e-294 1015.4 1083 51.6
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 1.7e-292 1009.6 1103 51.0
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 1.7e-292 1009.6 1085 50.4
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 3.9e-292 1008.4 1093 51.6
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.9e-291 1006.1 1083 51.3
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 3.3e-291 1005.4 1142 50.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 4.3e-291 1005.0 1083 51.4
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 5.6e-291 1004.6 1095 51.2
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 5.2e-289 998.0 1096 50.7
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.2e-288 996.9 1094 50.4
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 2.6e-288 995.7 1095 51.1
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 6.4e-287 991.1 1084 49.6
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 2.8e-282 975.7 1102 49.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 1.1e-281 973.8 1118 49.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 2.6e-280 969.1 1135 48.5
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 3.4e-280 968.8 1161 47.5
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 7.5e-280 967.6 1016 52.0
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 1.9e-278 963.0 1007 53.1
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 1.4e-270 936.8 924 53.8
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 3.9e-268 928.7 990 50.7
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 9.0e-265 917.5 926 53.6
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 9.0e-265 917.5 845 56.9
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.7e-263 913.3 797 59.2
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 6.9e-257 891.3 926 51.9
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 4.9e-255 885.2 1120 45.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.2e-248 864.0 919 51.0
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 7.1e-238 828.2 760 56.1
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 2.2e-234 816.6 1012 46.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.6e-232 809.7 1096 43.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.9e-232 808.5 871 49.7
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.8e-226 789.6 652 62.9
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.8e-223 779.2 1111 41.7
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.9e-206 723.8 1062 40.2
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 5.7e-195 685.6 784 48.9
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 5.4e-193 679.1 765 48.9
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-161 575.1 943 37.8
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 4.4e-155 553.1 580 51.9
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 4.4e-147 526.6 463 56.8
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-140 505.0 391 64.7
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 2.8e-133 480.7 601 46.8
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.9e-126 458.0 514 49.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-94 352.4 298 60.1
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.7e-82 312.0 337 47.8
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 5.2e-79 300.4 1227 24.5
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.4e-68 263.8 208 62.0
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.5e-65 255.0 490 35.9
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 8.9e-63 246.5 339 43.1
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 5.0e-58 230.7 355 40.3
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.2e-45 188.7 352 35.8
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 6.9e-39 167.2 197 50.3
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-33 149.4 224 40.6
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-33 149.4 224 40.6
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-33 149.4 224 40.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 9.6e-33 146.7 224 40.2
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-32 146.4 224 40.2
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 6.9e-31 140.6 361 29.4
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-28 133.3 261 35.6
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 4.2e-28 131.3 109 56.9
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.0e-26 125.2 224 37.1
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 1.9e-25 122.5 219 38.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 2.5e-25 122.1 219 38.4
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.3e-25 121.7 229 35.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.3e-24 119.8 176 40.9
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.4e-23 116.3 219 37.9
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-21 109.8 73 74.0
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 8.4e-21 107.1 299 28.4
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.1e-20 104.0 104 58.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-18 99.0 216 33.8
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.2e-16 90.9 242 29.8
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.9e-15 87.4 81 53.1
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.5e-14 84.7 221 31.2
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.0e-13 83.6 102 45.1
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.3e-13 83.2 58 63.8
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.1e-12 77.4 72 51.4
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.6e-11 76.3 50 74.0
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 4.8e-08 64.7 107 39.3


User provided reference genes

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