Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.8e-131 472.6 238 100.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.7e-57 225.7 244 52.0
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-56 223.8 247 50.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.4e-56 223.0 187 57.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.1e-56 222.2 192 57.3
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.4e-56 221.9 247 50.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-55 220.7 238 50.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.7e-55 219.5 184 57.6
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.8e-55 218.0 247 49.4
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 7.8e-55 218.0 172 59.3
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-54 217.2 172 60.5
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.7e-54 216.9 179 57.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.7e-54 216.9 197 54.3
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.7e-54 216.9 181 59.7
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.7e-54 216.9 225 49.8
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.3e-54 216.5 181 58.0
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.3e-54 216.5 172 58.7
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.0e-54 216.1 214 52.8
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-54 216.1 181 58.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.0e-54 216.1 244 49.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.0e-54 216.1 225 48.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.0e-54 216.1 172 60.5
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.0e-54 216.1 247 49.0
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.9e-54 215.7 245 49.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.9e-54 215.7 173 57.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 5.0e-54 215.3 182 57.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 6.6e-54 214.9 247 48.6
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 8.6e-54 214.5 181 55.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 8.6e-54 214.5 241 49.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.1e-53 214.2 172 58.7
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.9e-53 213.4 233 48.9
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.9e-53 213.4 183 58.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.9e-53 213.4 173 58.4
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.5e-53 213.0 181 58.6
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.5e-53 213.0 236 50.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.3e-53 212.6 163 62.0
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.3e-53 212.6 241 49.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.3e-53 212.6 241 49.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.3e-53 212.2 221 50.7
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 4.3e-53 212.2 173 58.4
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.6e-53 211.8 173 59.5
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.6e-53 211.8 181 57.5
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 7.3e-53 211.5 230 50.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.3e-53 211.5 173 58.4
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 9.5e-53 211.1 173 57.8
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 9.5e-53 211.1 173 59.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.2e-52 210.7 225 48.4
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.6e-52 210.3 174 55.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.1e-52 209.9 188 54.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-52 209.9 188 54.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.1e-52 209.9 151 65.6
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.1e-52 209.9 206 52.4
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.8e-52 209.5 237 49.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.8e-52 209.5 188 54.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-52 209.5 172 58.7
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.8e-52 209.5 181 54.1
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.8e-52 209.5 170 58.2
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.8e-52 209.5 193 52.8
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.6e-52 209.1 202 51.5
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.6e-52 209.1 182 56.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.6e-52 209.1 181 53.0
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.6e-52 209.1 173 58.4
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.6e-52 209.1 173 58.4
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.2e-52 208.4 172 57.6
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 6.2e-52 208.4 188 54.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 6.2e-52 208.4 244 47.1
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.1e-51 207.6 230 49.6
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.1e-51 207.6 173 57.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.1e-51 207.6 173 57.8
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.1e-51 207.6 173 57.8
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.1e-51 207.6 193 52.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.1e-51 207.6 172 58.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.1e-51 207.6 245 46.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.1e-51 207.6 251 43.8
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-51 207.2 173 57.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-51 207.2 173 57.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.4e-51 207.2 225 48.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.4e-51 207.2 182 55.5
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.4e-51 207.2 172 58.7
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.4e-51 207.2 184 53.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.8e-51 206.8 184 55.4
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.8e-51 206.8 245 46.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.3e-51 206.5 241 48.1
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 2.3e-51 206.5 239 45.6
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.1e-51 206.1 181 53.6
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.1e-51 206.1 181 53.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.1e-51 206.1 184 53.3
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.2e-51 205.3 207 50.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 6.8e-51 204.9 202 51.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.5e-50 203.8 243 46.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.5e-50 203.8 184 53.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.0e-50 203.4 194 52.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.6e-50 203.0 172 55.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.4e-50 202.6 267 44.6
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.4e-50 202.6 197 50.8
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.4e-50 202.2 172 57.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.4e-50 202.2 172 57.6
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.4e-50 202.2 172 57.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.4e-50 202.2 182 52.7
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 7.5e-50 201.4 188 53.7
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 9.8e-50 201.1 172 54.7
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 9.8e-50 201.1 172 54.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.7e-49 200.3 181 52.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.2e-49 199.9 247 46.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.2e-49 199.9 184 52.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.2e-49 199.9 239 46.9
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 3.7e-49 199.1 239 47.7
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.9e-49 198.7 241 46.5
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.9e-49 198.7 201 50.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.1e-48 195.7 236 46.2
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.1e-48 195.7 233 46.4
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.1e-48 195.7 166 56.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.1e-48 195.7 181 52.5
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.4e-48 195.3 172 54.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 7.0e-48 194.9 173 54.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.2e-48 194.5 173 54.3
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.2e-48 194.5 173 54.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.6e-47 193.7 173 53.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.6e-47 193.7 182 52.7
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.6e-47 193.7 241 45.6
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.1e-47 193.4 172 54.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.7e-47 193.0 192 51.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.7e-47 193.0 173 54.3
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 4.6e-47 192.2 179 51.4
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 4.6e-47 192.2 236 44.5
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-46 190.7 147 63.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-46 190.3 172 54.1
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.3e-46 189.9 172 51.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.9e-46 189.1 245 45.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-45 186.4 180 51.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.3e-43 179.9 156 57.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.1e-43 179.5 163 53.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-42 177.2 157 55.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.4e-42 176.0 224 44.2
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.5e-42 174.9 197 46.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.3e-41 171.4 162 54.3
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.1e-40 171.0 153 55.6
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.1e-40 169.1 220 43.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.0e-39 165.2 163 50.9
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 4.3e-37 159.1 154 54.5
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.6e-37 158.7 132 56.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-34 150.2 147 55.8
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 3.5e-31 139.4 171 43.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.3e-30 136.7 237 35.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.9e-30 136.0 173 41.6
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.1e-30 135.6 109 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 8.7e-30 134.8 174 40.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.4e-25 118.2 106 52.8
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.9e-24 117.1 173 37.6
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.0e-22 111.3 147 42.2
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.7e-17 94.0 157 36.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.9e-17 92.4 71 59.2
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 6.2e-12 75.5 86 45.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 4.2e-08 62.8 74 41.9


User provided reference genes

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