Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0051 Ceratophyllum demersum HOM05D003816 ORTHO05D004410 6.9e-53 210.3 101 100.0
Cfa016328 Carpinus fangiana HOM05D003816 ORTHO05D004410 2.9e-11 72.0 37 78.4
Lsat_1_v5_gn_8_6220 Lactuca sativa HOM05D003816 ORTHO05D004410 6.5e-11 70.9 44 65.9
Eucgr.A02683 Eucalyptus grandis HOM05D003816 ORTHO05D004410 8.5e-11 70.5 33 81.8
HanXRQChr14g0462661 Helianthus annuus HOM05D003816 ORTHO05D004410 8.5e-11 70.5 33 81.8
Lj5g0016706 Lotus japonicus HOM05D003816 ORTHO05D004410 8.5e-11 70.5 39 71.8
MBI06_g33549_MAGBIO Magnolia biondii HOM05D003816 ORTHO05D004410 1.1e-10 70.1 78 50.0
Nn1g04065 Nelumbo nucifera HOM05D003816 ORTHO05D004410 1.1e-10 70.1 32 87.5
Phvul.007G077200 Phaseolus vulgaris HOM05D003816 ORTHO05D004410 1.1e-10 70.1 34 79.4
Glyma.20G164100 Glycine max HOM05D003816 ORTHO05D004410 1.5e-10 69.7 32 84.4
Lalb_Chr21g0305321 Lupinus albus HOM05D003816 ORTHO05D004410 1.5e-10 69.7 32 81.2
HPP92_003943 Vanilla planifolia HOM05D003816 ORTHO05D004410 1.5e-10 69.7 32 84.4
CSS0012674 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 2.5e-10 68.9 45 64.4
CSS0031532 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 2.5e-10 68.9 45 64.4
Ca_10703_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 2.5e-10 68.9 37 75.7
Dinv28361 Davidia involucrata HOM05D003816 ORTHO05D004410 2.5e-10 68.9 45 62.2
Dinv35291 Davidia involucrata HOM05D000662 ORTHO05D004410 2.5e-10 68.9 45 62.2
PSO135G0392 Papaver somniferum HOM05D003816 ORTHO05D004410 2.5e-10 68.9 32 81.2
PSO384G0096 Papaver somniferum HOM05D003816 ORTHO05D004410 2.5e-10 68.9 32 81.2
PGR042G2117 Punica granatum HOM05D003816 ORTHO05D004410 2.5e-10 68.9 45 60.0
TAR629G2639 Trochodendron aralioides HOM05D003816 ORTHO05D004410 2.5e-10 68.9 32 81.2
TAR375G0902 Trochodendron aralioides HOM05D003816 ORTHO05D004410 4.2e-10 68.2 32 75.0
VMungo0720G2481 Vigna mungo HOM05D003816 ORTHO05D004410 4.2e-10 68.2 32 81.2
Cc02_g02150 Coffea canephora HOM05D003816 ORTHO05D004410 5.5e-10 67.8 40 67.5
HanXRQChr05g0144401 Helianthus annuus HOM05D003816 ORTHO05D004410 5.5e-10 67.8 45 60.0
CSS0016588 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 7.2e-10 67.4 33 78.8
ATR0665G060 Amborella trichopoda HOM05D003816 ORTHO05D004410 9.4e-10 67.0 32 81.2
ATR0749G058 Amborella trichopoda HOM05D003816 ORTHO05D004410 9.4e-10 67.0 32 81.2
Lsat_1_v5_gn_2_133601 Lactuca sativa HOM05D003816 ORTHO05D004410 9.4e-10 67.0 34 73.5
Hund14255 Selenicereus undatus HOM05D003816 ORTHO05D004410 9.4e-10 67.0 59 49.2
CAN.G532.69 Capsicum annuum HOM05D003816 ORTHO05D004410 1.6e-09 66.2 32 75.0
Nitab4.5_0000966g0010 Nicotiana tabacum HOM05D003816 ORTHO05D004410 1.6e-09 66.2 32 75.0
Peaxi162Scf00074g01527 Petunia axillaris HOM05D003816 ORTHO05D004410 1.6e-09 66.2 32 75.0
Solyc08g081750.3 Solanum lycopersicum HOM05D003816 ORTHO05D004410 1.6e-09 66.2 32 75.0
Sopen08g030050 Solanum pennellii HOM05D003816 ORTHO05D004410 1.6e-09 66.2 32 75.0
PGSC0003DMG401012173 Solanum tuberosum HOM05D003816 ORTHO05D004410 1.6e-09 66.2 32 75.0
Actinidia22704 Actinidia chinensis HOM05D000059 ORTHO05D004410 2.1e-09 65.9 32 75.0
Aqoxy7G02903 Aquilegia oxysepala HOM05D003816 ORTHO05D004410 2.1e-09 65.9 30 86.7
Lalb_Chr02g0141351 Lupinus albus HOM05D003816 ORTHO05D004410 2.1e-09 65.9 32 78.1
vmacro06596 Vaccinium macrocarpon HOM05D003816 ORTHO05D004410 2.1e-09 65.9 42 64.3
MELO3C005852.2 Cucumis melo HOM05D003816 ORTHO05D004410 2.7e-09 65.5 53 49.1
TPR.G7761 Trifolium pratense HOM05D003816 ORTHO05D004410 2.7e-09 65.5 37 70.3
TWI15G0065 Tripterygium wilfordii HOM05D003816 ORTHO05D004410 2.7e-09 65.5 30 83.3
ECA233G6188 Erigeron canadensis HOM05D003816 ORTHO05D004410 3.6e-09 65.1 45 60.0
Psat0s694g0040 Pisum sativum HOM05D003816 ORTHO05D004410 3.6e-09 65.1 32 78.1
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 3.6e-09 65.1 44 63.6
ClCG01G000780 Citrullus lanatus HOM05D003816 ORTHO05D004410 4.7e-09 64.7 47 55.3
Ciclev10020944m.g Citrus clementina HOM05D003816 ORTHO05D004410 4.7e-09 64.7 30 80.0
CsaV3_5G000910 Cucumis sativus L. HOM05D003816 ORTHO05D004410 4.7e-09 64.7 45 57.8
DCAR_020292 Daucus carota HOM05D003816 ORTHO05D004410 4.7e-09 64.7 33 69.7
Glyma.10G229000 Glycine max HOM05D003816 ORTHO05D004410 4.7e-09 64.7 32 75.0
Medtr1g099420 Medicago truncatula HOM05D003816 ORTHO05D004410 4.7e-09 64.7 37 67.6
Oeu008845.1 Olea europaea HOM05D003816 ORTHO05D004410 4.7e-09 64.7 32 75.0
Potri.001G097500 Populus trichocarpa HOM05D003816 ORTHO05D004410 4.7e-09 64.7 30 80.0
PGR031G1220 Punica granatum HOM05D003816 ORTHO05D004410 4.7e-09 64.7 31 74.2
Sabra01G0073000 Salix brachista HOM05D000147 ORTHO05D002016 4.7e-09 64.7 30 80.0
Sabra03G0096100 Salix brachista HOM05D003816 ORTHO05D004410 4.7e-09 64.7 30 80.0
Sed0000969 Sechium edule HOM05D003816 ORTHO05D004410 4.7e-09 64.7 45 57.8
Sed0004130 Sechium edule HOM05D003816 ORTHO05D004410 4.7e-09 64.7 43 60.5
Actinidia34174 Actinidia chinensis HOM05D003816 ORTHO05D004410 6.1e-09 64.3 33 69.7
Manes.01G051000 Manihot esculenta HOM05D003816 ORTHO05D004410 6.1e-09 64.3 30 80.0
Atru.chr1.320 Acer truncatum HOM05D003816 ORTHO05D004410 8.0e-09 63.9 57 56.1
Atru.chr9.2089 Acer truncatum HOM05D003816 ORTHO05D004410 8.0e-09 63.9 30 76.7
Duzib205G1652 Durio zibethinus HOM05D003816 ORTHO05D004410 8.0e-09 63.9 30 80.0
Migut.A00701 Erythranthe guttata HOM05D003816 ORTHO05D004410 8.0e-09 63.9 32 75.0
Oeu063040.1 Olea europaea HOM05D003816 ORTHO05D004410 8.0e-09 63.9 32 75.0
COL.COLO4_08337 Corchorus olitorius HOM05D000059 ORTHO05D004410 1.0e-08 63.5 30 76.7
Duzib068G1263 Durio zibethinus HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 76.7
Gohir.A08G113000 Gossypium hirsutum HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 76.7
Gohir.D08G133800 Gossypium hirsutum HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 76.7
Gorai.004G136900 Gossypium raimondii HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 76.7
Potri.003G133800 Populus trichocarpa HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 76.7
QL02p032669 Quercus lobata HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 80.0
Thecc.03G288800 Theobroma cacao HOM05D003816 ORTHO05D004410 1.0e-08 63.5 30 76.7
unitig_0.g2849 Utricularia gibba HOM05D003816 ORTHO05D004410 1.0e-08 63.5 32 75.0
GSVIVG01019444001 Vitis vinifera HOM05D003816 ORTHO05D004410 1.0e-08 63.5 32 71.9
Actinidia27352 Actinidia chinensis HOM05D003816 ORTHO05D004410 1.4e-08 63.2 88 42.0
Cfa012263 Carpinus fangiana HOM05D000154 ORTHO05D004410 1.4e-08 63.2 30 76.7
Haze_08729 Corylus avellana HOM05D003816 ORTHO05D004410 1.4e-08 63.2 30 76.7
Sc07g0009900 Simmondsia chinensis HOM05D003816 ORTHO05D004410 1.4e-08 63.2 30 80.0
SGA_v2.0_scaffold173G39120 Striga asiatica HOM05D003816 ORTHO05D004410 1.4e-08 63.2 32 71.9
vmacro13989 Vaccinium macrocarpon HOM05D003816 ORTHO05D004410 1.4e-08 63.2 32 71.9
Actinidia08605 Actinidia chinensis HOM05D003816 ORTHO05D004410 1.8e-08 62.8 45 55.6
MSTRG.11945 Avicennia marina HOM05D003816 ORTHO05D004410 1.8e-08 62.8 32 71.9
Dinv07571 Davidia involucrata HOM05D003816 ORTHO05D004410 1.8e-08 62.8 32 75.0
Lj2P175T52 Lonicera japonica HOM05D003816 ORTHO05D004410 1.8e-08 62.8 32 68.8
Manes.02G015300 Manihot esculenta HOM05D003816 ORTHO05D004410 1.8e-08 62.8 30 76.7
Eucgr.D01795 Eucalyptus grandis HOM05D003816 ORTHO05D004410 2.3e-08 62.4 31 67.7
FvH4_5g03580 Fragaria vesca HOM05D003816 ORTHO05D004410 2.3e-08 62.4 30 76.7
FAN04G0729 Fragaria x ananassa HOM05D003816 ORTHO05D004410 2.3e-08 62.4 30 76.7
FAN04G2543 Fragaria x ananassa HOM05D003816 ORTHO05D004410 2.3e-08 62.4 30 76.7
FAN08G3004 Fragaria x ananassa HOM05D003816 ORTHO05D004410 2.3e-08 62.4 30 76.7
FAN13G2496 Fragaria x ananassa HOM05D003816 ORTHO05D004410 2.3e-08 62.4 30 76.7
Phvul.002G294300 Phaseolus vulgaris HOM05D003816 ORTHO05D004410 2.3e-08 62.4 31 71.0
Prupe.5G110300 Prunus persica HOM05D003816 ORTHO05D004410 2.3e-08 62.4 74 43.2
THA.LOC104809356 Tarenaya hassleriana HOM05D003816 ORTHO05D004410 2.3e-08 62.4 30 76.7
VMungo0251G3347 Vigna mungo HOM05D003816 ORTHO05D004410 2.3e-08 62.4 31 71.0
Gohir.A02G104000 Gossypium hirsutum HOM05D003816 ORTHO05D004410 3.0e-08 62.0 30 73.3
Gohir.A11G023400 Gossypium hirsutum HOM05D003816 ORTHO05D004410 3.0e-08 62.0 30 73.3
Gohir.D03G079700 Gossypium hirsutum HOM05D003816 ORTHO05D004410 3.0e-08 62.0 30 73.3
Gohir.D11G023100 Gossypium hirsutum HOM05D003816 ORTHO05D004410 3.0e-08 62.0 30 73.3
Gorai.003G084200 Gossypium raimondii HOM05D003816 ORTHO05D004410 3.0e-08 62.0 30 73.3
Gorai.007G024900 Gossypium raimondii HOM05D003816 ORTHO05D004410 3.0e-08 62.0 30 73.3
Pp3c2_33420 Physcomitrium patens HOM05D003816 ORTHO05D004410 3.0e-08 62.0 34 64.7
Aa31LG1G12710 Aethionema arabicum HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
AagrBONN_evm.TU.Sc2ySwM_228.1353 Anthoceros agrestis HOM05D003816 ORTHO05D004410 4.0e-08 61.6 31 74.2
BcaB05g22667 Brassica carinata HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
BcaC03g13940 Brassica carinata HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
BNapus_Darmor_BZH_scaffold_38p00150 Brassica napus HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
C02p11490 Brassica napus HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
BolC2t07223H Brassica oleracea HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
BraA02t05706Z Brassica rapa HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
CARHR274430 Cardamine hirsuta HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
CiPaw.11G127500 Carya illinoinensis HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
CiPaw.12G087600 Carya illinoinensis HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
CDE01G0214 Ceratophyllum demersum HOM05D003816 ORTHO05D004410 4.0e-08 61.6 26 100.0
Thhalv10013994m.g Eutrema salsugineum HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
Glyma.05G213000 Glycine max HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
Glyma.08G019500 Glycine max HOM05D003816 ORTHO05D004410 4.0e-08 61.6 30 73.3
Cpa.g.sc122.12 Carica papaya HOM05D003816 ORTHO05D004410 5.2e-08 61.2 30 73.3
Lalb_Chr09g0332761 Lupinus albus HOM05D003816 ORTHO05D004410 6.7e-08 60.8 66 40.9
Rhsim07G0086200 Rhododendron simsii HOM05D000059 ORTHO05D000128 6.7e-08 60.8 32 68.8
RcHm_v2.0_Chr7g0196131 Rosa chinensis HOM05D003816 ORTHO05D004410 6.7e-08 60.8 30 73.3
AUR62010771 Chenopodium quinoa HOM05D003816 ORTHO05D004410 8.8e-08 60.5 30 76.7
AUR62019773 Chenopodium quinoa HOM05D003816 ORTHO05D004410 8.8e-08 60.5 30 76.7
AL8G37340 Arabidopsis lyrata HOM05D003816 ORTHO05D004410 1.1e-07 60.1 30 70.0
AT5G60750 Arabidopsis thaliana HOM05D003816 ORTHO05D004410 1.1e-07 60.1 30 70.0
Carub.0008s2143 Capsella rubella HOM05D003816 ORTHO05D004410 1.1e-07 60.1 30 70.0
Haze_00080 Corylus avellana HOM05D003816 ORTHO05D004410 1.1e-07 60.1 57 50.9
unitig_88.g27629 Utricularia gibba HOM05D003816 ORTHO05D004410 1.1e-07 60.1 32 68.8
Ca_10960_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 1.5e-07 59.7 30 70.0
Ca_29631_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 1.5e-07 59.7 30 70.0
Lj4g0017897 Lotus japonicus HOM05D003816 ORTHO05D004410 1.5e-07 59.7 30 70.0
Os06g0505400 Oryza sativa ssp. japonica HOM05D003816 ORTHO05D004410 1.5e-07 59.7 30 73.3
DCAR_006850 Daucus carota HOM05D003816 ORTHO05D004410 2.0e-07 59.3 32 68.8
Sp6g22330 Schrenkiella parvula HOM05D003816 ORTHO05D004410 2.0e-07 59.3 30 70.0
Zm00001eb032160 Zea mays HOM05D003816 ORTHO05D004410 2.0e-07 59.3 32 68.8
Medtr8g099085 Medicago truncatula HOM05D003816 ORTHO05D004410 2.6e-07 58.9 30 66.7
arahy.Tifrunner.gnm1.ann1.8C5G5Z Arachis hypogaea HOM05D003816 ORTHO05D004410 3.3e-07 58.5 30 66.7
arahy.Tifrunner.gnm1.ann1.E6YVBJ Arachis hypogaea HOM05D003816 ORTHO05D004410 3.3e-07 58.5 30 66.7
Lalb_Chr05g0224371 Lupinus albus HOM05D003816 ORTHO05D004410 3.3e-07 58.5 30 70.0
TPR.G3391 Trifolium pratense HOM05D003816 ORTHO05D004410 3.3e-07 58.5 30 66.7
MD14G1115700 Malus domestica HOM05D003816 ORTHO05D004410 5.7e-07 57.8 30 73.3
Cc08_g15460 Coffea canephora HOM05D003816 ORTHO05D004410 7.5e-07 57.4 32 68.8
EL10Ac5g12851 Beta vulgaris HOM05D003816 ORTHO05D004410 1.3e-06 56.6 30 70.0
MD06G1095700 Malus domestica HOM05D003816 ORTHO05D004410 1.3e-06 56.6 30 73.3
Rhsim03G0196400 Rhododendron simsii HOM05D003816 ORTHO05D004410 6.3e-06 54.3 57 47.4
SEGI_16728 Sequoiadendron giganteum HOM05D003816 ORTHO05D004410 6.3e-06 54.3 32 59.4


User provided reference genes

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