Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.2e-103 377.1 196 100.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.1e-90 335.9 209 85.6
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 5.8e-64 248.1 203 65.5
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.7e-63 246.5 203 67.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.4e-62 243.4 184 70.1
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.4e-62 242.7 196 67.9
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.1e-62 241.9 196 67.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 4.1e-62 241.9 198 66.7
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.1e-61 239.6 203 65.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.5e-61 238.8 196 66.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.5e-61 238.8 196 66.8
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.8e-61 237.7 199 65.3
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.0e-60 237.3 193 65.8
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.0e-60 237.3 200 64.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.3e-60 236.9 197 67.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.7e-60 236.5 200 65.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.3e-60 236.1 189 68.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 3.0e-60 235.7 193 66.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 3.9e-60 235.3 194 66.0
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.9e-60 235.3 190 66.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 8.6e-60 234.2 203 61.1
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 8.6e-60 234.2 204 64.2
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.5e-59 233.4 206 63.1
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.9e-59 233.0 193 67.4
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.5e-59 232.6 176 69.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.3e-59 232.3 197 67.0
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.3e-59 231.9 188 67.0
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.3e-59 231.9 176 69.9
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 5.6e-59 231.5 200 62.5
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.6e-59 231.5 205 60.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 9.5e-59 230.7 200 62.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.6e-58 229.9 203 63.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.6e-58 229.9 206 62.6
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.8e-58 229.2 200 64.0
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.8e-58 229.2 197 65.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.8e-58 229.2 194 64.4
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.6e-58 228.8 200 64.0
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 4.7e-58 228.4 204 63.2
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.7e-58 228.4 198 65.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 4.7e-58 228.4 184 67.4
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 6.2e-58 228.0 201 64.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.2e-58 228.0 197 64.5
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.2e-58 228.0 200 62.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 8.1e-58 227.6 204 62.7
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.1e-57 227.3 194 66.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-57 227.3 190 66.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.4e-57 226.9 203 63.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.8e-57 226.5 200 60.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.4e-57 226.1 197 64.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.4e-57 226.1 200 64.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.4e-57 226.1 200 64.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.4e-57 226.1 197 62.4
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.5e-56 223.4 201 60.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.5e-56 223.4 200 62.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.0e-56 223.0 189 66.1
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.0e-56 223.0 200 63.5
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.6e-56 222.6 197 61.9
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.6e-56 222.6 193 64.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.6e-56 222.6 206 61.7
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.4e-56 222.2 203 62.1
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.4e-56 222.2 193 64.2
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.4e-56 222.2 198 63.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.8e-56 221.5 200 62.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 5.8e-56 221.5 203 61.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 5.8e-56 221.5 200 62.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.6e-56 221.1 201 61.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 9.9e-56 220.7 203 61.6
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 9.9e-56 220.7 197 61.4
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.7e-55 219.9 153 76.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.7e-55 219.9 215 57.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.2e-55 219.5 203 61.1
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.9e-55 219.2 195 60.5
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.8e-55 218.8 200 60.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.9e-55 218.4 197 61.9
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.9e-55 218.4 205 59.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.4e-55 218.0 200 61.5
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.4e-55 218.0 200 58.5
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.4e-55 217.6 199 60.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 8.4e-55 217.6 201 60.7
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-54 217.2 200 61.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-54 217.2 200 58.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.1e-54 217.2 200 61.0
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-54 216.9 197 61.4
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.4e-54 216.9 206 59.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.4e-54 216.9 211 58.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.9e-54 216.5 195 60.5
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.4e-54 216.1 125 88.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 3.2e-54 215.7 209 60.3
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 5.4e-54 214.9 199 58.8
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.4e-54 214.9 201 62.2
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.4e-54 214.9 201 62.2
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.4e-54 214.9 196 61.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 7.1e-54 214.5 209 59.8
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.2e-53 213.8 193 61.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.7e-53 212.6 156 71.2
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.7e-53 212.6 203 60.1
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 3.5e-53 212.2 195 62.1
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.7e-52 209.9 195 61.5
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.3e-52 209.5 175 62.3
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.3e-52 209.5 195 61.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 3.0e-52 209.1 195 61.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.9e-52 208.8 201 57.2
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 6.6e-52 208.0 195 61.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 6.6e-52 208.0 207 56.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 8.7e-52 207.6 128 82.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.9e-51 206.5 175 62.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 2.5e-51 206.1 189 60.8
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.5e-51 206.1 189 63.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.3e-51 205.7 169 66.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 7.3e-51 204.5 128 81.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.2e-50 203.8 194 58.2
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.8e-50 202.6 199 59.3
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 4.7e-50 201.8 200 56.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.1e-49 200.7 195 59.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.8e-49 199.9 206 56.8
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 6.9e-49 198.0 122 80.3
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.0e-49 197.6 162 65.4
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.4e-48 195.3 188 60.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.4e-48 195.3 122 79.5
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.4e-47 191.0 161 70.8
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.9e-46 189.9 197 58.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.2e-46 189.1 155 68.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.1e-45 186.4 194 56.7
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 7.8e-45 184.5 197 57.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.9e-43 179.9 181 55.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 9.6e-43 177.6 171 58.5
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.8e-41 173.3 173 57.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 4.5e-40 168.7 196 54.1
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 9.9e-40 167.5 109 79.8
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.9e-39 166.0 167 59.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.6e-37 160.2 100 81.0
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.1e-37 159.8 102 77.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 5.1e-36 155.2 176 50.6
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 8.7e-36 154.5 147 56.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.5e-35 153.7 145 59.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.8e-33 146.7 145 58.6
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.7e-31 140.2 168 49.4
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.7e-31 140.2 123 62.6
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 7.4e-27 124.8 146 48.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.4e-25 120.6 162 44.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.6e-24 116.3 176 45.5
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 7.6e-24 114.8 87 67.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.1e-19 100.9 113 54.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.8e-17 93.6 95 56.8
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.3e-11 72.4 122 36.1
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 4.3e-11 72.4 56 67.9
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 9.7e-11 71.2 56 67.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 3.1e-09 66.2 40 82.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.5e-08 63.9 115 33.9
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.4e-06 57.4 66 50.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 5.5e-06 55.5 73 41.1


User provided reference genes

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