Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 9.2e-147 523.5 254 100.0
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 3.1e-78 295.8 248 60.1
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 4.1e-78 295.4 248 59.3
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.6e-77 293.5 255 58.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 3.5e-77 292.4 251 61.4
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 7.7e-77 291.2 249 59.4
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.0e-76 290.8 249 59.0
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 3.8e-76 288.9 252 60.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 2.5e-75 286.2 248 60.1
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 3.2e-75 285.8 248 58.5
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.2e-75 285.8 252 58.7
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 3.2e-75 285.8 248 59.7
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 4.2e-75 285.4 249 58.2
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 5.5e-75 285.0 249 58.2
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.5e-75 285.0 248 58.5
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 7.2e-75 284.6 250 58.8
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.2e-74 283.9 251 59.4
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.6e-74 283.5 248 58.5
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.6e-74 283.5 248 59.3
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 3.6e-74 282.3 249 58.6
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 3.6e-74 282.3 249 57.8
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 6.1e-74 281.6 248 59.3
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 6.1e-74 281.6 250 58.0
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 6.1e-74 281.6 248 59.7
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 8.0e-74 281.2 249 59.0
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 8.0e-74 281.2 250 58.4
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 5.2e-73 278.5 253 57.3
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 8.8e-73 277.7 248 56.9
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.2e-72 277.3 248 56.5
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 2.6e-72 276.2 248 58.5
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 3.4e-72 275.8 253 54.5
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.4e-72 275.8 248 58.5
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 3.4e-72 275.8 249 59.4
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.4e-72 275.8 248 56.9
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 4.4e-72 275.4 248 58.1
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 5.7e-72 275.0 249 57.4
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 7.5e-72 274.6 248 58.5
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.8e-72 274.2 248 58.5
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.3e-71 273.9 284 52.5
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.8e-71 272.7 249 57.0
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 3.7e-71 272.3 249 56.6
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 6.3e-71 271.6 249 57.0
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 8.3e-71 271.2 250 57.6
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.1e-70 270.8 248 57.3
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.4e-70 270.4 248 56.0
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.4e-70 270.4 254 56.7
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.8e-70 270.0 251 57.0
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.8e-70 270.0 256 55.5
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.8e-70 270.0 248 56.5
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 3.1e-70 269.2 248 54.4
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.1e-70 268.9 248 55.6
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.2e-69 267.3 249 55.8
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.6e-69 266.9 250 55.6
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 2.0e-69 266.5 248 56.9
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 2.7e-69 266.2 250 54.0
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 3.5e-69 265.8 248 55.2
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 4.5e-69 265.4 249 57.4
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 4.5e-69 265.4 248 54.8
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 5.9e-69 265.0 248 55.2
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 5.9e-69 265.0 248 54.8
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 7.7e-69 264.6 248 54.8
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.0e-68 264.2 248 54.8
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.0e-68 264.2 251 56.6
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 1.3e-68 263.8 260 53.5
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 1.7e-68 263.5 251 55.4
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.2e-68 263.1 248 54.8
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.2e-68 263.1 248 54.0
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 2.9e-68 262.7 249 53.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.9e-68 262.7 255 54.5
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 5.0e-68 261.9 251 55.8
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 6.5e-68 261.5 264 54.2
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 2.5e-67 259.6 248 54.0
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 4.2e-67 258.8 243 53.9
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 5.5e-67 258.5 248 54.0
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 5.5e-67 258.5 248 53.6
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 7.2e-67 258.1 248 53.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.2e-66 257.3 248 53.2
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.2e-66 257.3 248 54.4
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.6e-66 256.9 248 55.2
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 2.1e-66 256.5 249 53.8
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 2.7e-66 256.1 255 55.7
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 4.7e-66 255.4 251 52.6
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.4e-65 253.8 249 51.4
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.8e-65 253.4 193 63.2
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.8e-65 253.4 245 54.3
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 2.0e-64 250.0 199 61.3
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 4.4e-64 248.8 256 52.0
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 2.2e-63 246.5 298 46.6
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.4e-62 243.8 256 50.8
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 2.4e-62 243.0 201 59.2
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.1e-62 242.7 249 49.8
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.7e-60 236.9 246 49.6
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 2.9e-60 236.1 247 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 8.6e-60 234.6 198 58.6
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 2.2e-55 219.9 247 48.2
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.4e-54 216.5 246 48.4
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.3e-52 210.7 156 62.8
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 6.6e-52 208.4 203 55.2
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.9e-51 206.8 249 47.4
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.9e-51 206.8 251 43.0
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 7.3e-51 204.9 183 59.0
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.1e-50 203.4 188 56.4
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 2.8e-50 203.0 182 58.2
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 4.7e-50 202.2 180 57.2
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 2.3e-49 199.9 154 60.4
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 5.2e-49 198.7 154 61.7
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.2e-48 197.6 256 46.9
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.3e-47 194.1 248 46.4
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 5.4e-46 188.7 130 66.9
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.0e-44 184.5 131 66.4
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.6e-42 176.0 147 58.5
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 8.6e-36 154.8 234 38.5
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 3.3e-35 152.9 154 54.5
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 6.8e-33 145.2 203 39.9
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.3e-31 141.0 244 36.9
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 7.1e-30 135.2 415 27.2
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 5.6e-27 125.6 138 47.1
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 9.6e-27 124.8 106 57.5
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 7.6e-24 115.2 198 37.9
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 8.4e-23 111.7 247 32.0
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.9e-20 102.8 182 37.4
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 7.3e-19 98.6 61 70.5
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.9e-15 85.9 67 55.2
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.1e-14 84.7 66 59.1
CDE12G0425 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 2.1e-13 80.5 45 86.7
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 3.0e-12 76.6 51 66.7
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 2.1e-10 70.5 71 45.1
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 3.4e-08 63.2 61 54.1
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 3.4e-08 63.2 63 47.6
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 4.5e-08 62.8 31 83.9
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.2e-07 60.5 36 66.7
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 3.8e-07 59.7 39 69.2
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.1e-06 58.2 47 59.6
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 4.2e-06 56.2 42 59.5


User provided reference genes

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