Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 5.6e-127 457.6 230 100.0
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.1e-93 345.1 228 72.8
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 9.1e-93 344.0 228 71.5
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 1.2e-92 343.6 226 71.7
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.2e-92 343.6 226 72.6
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.2e-92 343.6 226 72.1
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 2.0e-92 342.8 226 72.1
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 3.5e-92 342.0 226 72.1
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 3.5e-92 342.0 226 72.6
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 3.5e-92 342.0 226 72.6
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.0e-91 340.5 226 72.1
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.0e-91 340.5 226 72.1
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.0e-91 340.5 226 71.7
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.0e-91 340.5 228 71.1
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.3e-91 340.1 226 72.1
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.7e-91 339.7 226 70.8
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.7e-91 339.7 226 72.1
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 2.2e-91 339.3 226 71.2
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.2e-91 339.3 228 71.1
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 2.2e-91 339.3 228 70.2
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 2.9e-91 339.0 228 71.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.9e-91 339.0 226 71.7
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.9e-91 339.0 226 71.7
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.9e-91 339.0 228 70.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 71.7
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 71.2
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 71.2
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 71.7
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 3.8e-91 338.6 229 71.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 70.8
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 3.8e-91 338.6 228 71.1
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 5.0e-91 338.2 226 70.8
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 5.0e-91 338.2 226 70.8
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 6.5e-91 337.8 226 71.2
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 6.5e-91 337.8 226 71.2
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 6.5e-91 337.8 226 70.8
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.4e-90 336.7 226 70.8
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.4e-90 336.7 226 71.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.4e-90 336.7 226 71.2
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.9e-90 336.3 228 71.1
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.5e-90 335.9 226 70.8
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.5e-90 335.9 228 70.2
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.2e-90 335.5 228 70.6
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 3.2e-90 335.5 226 69.9
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 3.2e-90 335.5 226 70.8
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 4.2e-90 335.1 226 69.5
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 4.2e-90 335.1 228 70.6
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.2e-90 335.1 226 70.8
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 5.5e-90 334.7 226 70.8
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 5.5e-90 334.7 226 70.4
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 7.2e-90 334.3 226 70.4
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.4e-90 334.0 228 69.7
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-89 333.6 226 70.8
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.6e-89 333.2 226 69.0
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.1e-89 332.8 226 70.4
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.7e-89 332.4 226 69.5
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 2.7e-89 332.4 228 70.2
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.6e-89 332.0 226 69.5
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.6e-89 332.0 226 69.0
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 3.6e-89 332.0 226 69.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.7e-89 331.6 226 70.4
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 6.1e-89 331.3 226 68.6
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 6.1e-89 331.3 226 69.9
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 6.1e-89 331.3 226 69.0
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 8.0e-89 330.9 226 69.0
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.0e-88 330.5 226 69.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.4e-88 330.1 228 69.7
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.8e-88 329.7 226 68.6
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.8e-88 329.7 226 68.6
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.8e-88 329.7 228 69.3
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 3.0e-88 328.9 228 69.3
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 3.9e-88 328.6 226 68.6
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.9e-88 328.6 226 67.7
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.9e-88 328.6 226 69.0
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.9e-88 328.6 226 69.0
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 6.7e-88 327.8 226 68.6
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 8.8e-88 327.4 221 70.1
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 2.6e-87 325.9 226 68.1
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.6e-87 325.9 226 69.5
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 3.3e-87 325.5 226 68.1
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 3.3e-87 325.5 235 66.8
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 4.4e-87 325.1 226 68.1
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.3e-86 323.6 225 68.0
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.7e-86 323.2 226 68.1
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.2e-86 322.8 226 68.1
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.8e-86 322.4 225 68.0
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 3.7e-86 322.0 227 66.1
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 6.3e-86 321.2 227 65.6
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 1.4e-85 320.1 230 66.5
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.4e-85 320.1 226 68.6
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 2.4e-85 319.3 226 66.4
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 3.1e-85 318.9 226 65.9
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 7.0e-85 317.8 226 65.9
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 2.0e-84 316.2 253 61.7
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-83 313.9 228 67.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 8.5e-83 310.8 226 63.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 4.7e-81 305.1 211 70.6
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 4.0e-80 302.0 210 68.6
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 1.7e-78 296.6 200 71.0
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.2e-78 296.2 201 70.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.7e-78 295.4 226 64.6
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 6.3e-78 294.7 193 73.6
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.4e-77 293.5 203 69.5
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 7.0e-77 291.2 187 74.3
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.2e-76 290.4 193 73.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.0e-76 289.7 196 70.9
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 5.9e-76 288.1 191 72.8
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 5.9e-76 288.1 189 72.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.0e-75 287.3 190 72.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 8.5e-75 284.3 226 62.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.9e-74 283.1 233 61.4
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 3.0e-72 275.8 184 73.9
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.0e-71 273.1 230 60.0
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.8e-70 269.2 226 60.2
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 2.7e-68 262.7 185 68.6
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 3.6e-65 252.3 226 57.5
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 6.8e-64 248.1 160 71.9
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 2.0e-63 246.5 164 73.8
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.1e-61 239.2 158 69.6
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 4.7e-57 225.3 354 38.1
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.9e-54 215.3 158 61.4
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.5e-50 203.0 179 57.0
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.7e-44 183.0 119 68.9
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.5e-44 182.6 131 63.4
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.5e-26 123.2 135 47.4
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 1.0e-19 101.3 55 74.5
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.7e-19 98.2 67 70.1
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 3.4e-15 86.3 154 36.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.4e-13 80.1 70 51.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.4e-13 80.1 45 75.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.3e-11 73.6 52 59.6
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.0e-11 73.2 122 41.8
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.8e-09 65.9 57 52.6


User provided reference genes

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