Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 0.0e+00 1387.9 765 100.0
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.5e-48 197.6 458 34.1
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 6.0e-48 196.8 512 31.8
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 5.6e-46 190.3 332 36.4
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 4.7e-45 187.2 332 36.1
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.1e-44 186.0 303 38.6
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 1.1e-44 186.0 263 41.1
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.9e-44 183.0 268 40.3
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.2e-43 182.6 303 39.6
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.0e-43 181.8 442 33.0
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 9.9e-43 179.5 340 35.9
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.7e-42 177.6 338 36.4
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 4.9e-42 177.2 294 39.1
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 4.9e-42 177.2 346 37.6
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 6.4e-42 176.8 334 36.2
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.4e-42 176.8 294 38.1
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.4e-41 175.6 306 38.9
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.4e-41 175.6 311 37.3
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.4e-41 175.6 277 40.1
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.4e-41 175.6 394 31.7
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 3.2e-41 174.5 307 37.5
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 4.1e-41 174.1 264 39.4
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 4.1e-41 174.1 461 31.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 7.1e-41 173.3 312 36.2
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 7.1e-41 173.3 347 36.0
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 9.2e-41 172.9 429 33.1
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 9.2e-41 172.9 282 37.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 9.2e-41 172.9 264 39.4
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 9.2e-41 172.9 493 30.0
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.2e-40 172.6 293 36.9
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.2e-40 172.6 348 33.9
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.2e-40 172.6 444 30.4
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.2e-40 172.6 300 37.7
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.6e-40 172.2 299 38.8
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.6e-40 172.2 444 30.4
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.7e-40 171.4 506 29.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.7e-40 171.4 444 30.2
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.7e-40 171.4 325 37.2
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 2.7e-40 171.4 298 38.6
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 2.7e-40 171.4 323 35.6
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.5e-40 171.0 268 38.4
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 3.5e-40 171.0 272 37.9
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 3.5e-40 171.0 441 31.1
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.5e-40 171.0 407 32.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.5e-40 171.0 325 35.4
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.6e-40 170.6 357 36.1
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 6.0e-40 170.2 368 32.9
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 6.0e-40 170.2 295 36.6
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.0e-39 169.5 301 36.9
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.0e-39 169.5 357 36.1
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.3e-39 169.1 496 29.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.7e-39 168.7 326 35.9
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.7e-39 168.7 313 34.5
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 2.3e-39 168.3 442 31.4
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.3e-39 168.3 357 35.9
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 2.3e-39 168.3 481 29.7
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 3.0e-39 167.9 499 29.5
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 3.9e-39 167.5 438 32.4
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.9e-39 167.5 473 29.8
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 3.9e-39 167.5 307 37.8
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.6e-39 166.8 427 30.0
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 8.6e-39 166.4 335 35.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.1e-38 166.0 332 35.5
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.9e-38 165.2 440 33.0
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.5e-38 164.9 346 34.4
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 4.3e-38 164.1 473 30.9
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.3e-38 164.1 261 36.8
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 4.3e-38 164.1 319 33.9
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 5.6e-38 163.7 282 37.6
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 7.3e-38 163.3 339 34.2
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 9.5e-38 162.9 490 31.0
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 1.2e-37 162.5 310 36.5
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.2e-37 162.5 397 33.5
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.2e-37 162.5 424 29.7
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.1e-37 161.8 403 31.3
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.1e-37 161.8 401 32.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.6e-37 161.0 310 36.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.1e-36 159.5 333 35.4
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.4e-36 159.1 301 37.5
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.8e-36 158.7 301 37.5
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 3.1e-36 157.9 301 37.5
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 3.1e-36 157.9 301 37.5
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 3.1e-36 157.9 301 37.5
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 8.9e-36 156.4 493 29.0
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.5e-35 155.6 320 36.9
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 2.0e-35 155.2 185 44.9
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 2.0e-35 155.2 185 44.9
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.0e-35 155.2 467 30.0
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 7.6e-35 153.3 396 29.5
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 8.4e-34 149.8 308 31.5
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.7e-32 144.8 364 31.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.0e-31 142.9 432 30.3
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.0e-31 142.9 227 36.6
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 3.3e-30 137.9 362 32.3
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.3e-30 137.9 264 36.0
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 4.3e-30 137.5 323 30.0
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.5e-27 129.0 320 31.9
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 5.8e-27 127.1 426 28.2
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.3e-26 125.9 166 41.0
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.8e-26 124.4 174 39.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.9e-25 122.1 170 40.0
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.5e-24 117.9 155 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 9.6e-22 109.8 185 36.2
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 9.9e-19 99.8 450 27.6
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.4e-17 95.1 305 30.8
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.2e-17 94.7 142 39.4
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 4.8e-13 80.9 79 45.6
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.5e-09 67.4 316 25.3
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.6e-08 65.9 121 33.9
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-08 65.9 172 26.2
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.0e-07 63.2 182 25.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.3e-07 62.8 174 27.6
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 5.1e-07 60.8 174 29.3


User provided reference genes

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