Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 6.4e-74 281.2 205 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.2e-16 90.9 177 44.6
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.4e-15 87.4 161 60.2
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 4.0e-15 85.9 166 56.6
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 4.0e-15 85.9 166 56.6
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 2.0e-14 83.6 173 60.1
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 7.5e-14 81.6 193 53.9
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 9.8e-14 81.3 184 52.7
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.7e-13 80.5 193 51.3
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.2e-13 80.1 199 53.3
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 3.7e-13 79.3 181 56.4
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 8.3e-13 78.2 192 53.6
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 2.4e-12 76.6 153 62.1
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.1e-12 76.3 185 48.6
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.1e-12 76.3 183 56.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 4.1e-12 75.9 183 52.5
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 4.1e-12 75.9 183 54.6
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 5.4e-12 75.5 186 54.3
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 5.4e-12 75.5 186 52.7
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 9.2e-12 74.7 192 30.2
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 9.2e-12 74.7 185 54.1
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 9.2e-12 74.7 182 54.4
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.2e-11 74.3 190 54.2
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.6e-11 73.9 157 60.5
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 2.0e-11 73.6 192 30.2
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.0e-11 73.6 192 29.7
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 2.0e-11 73.6 192 30.2
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 2.0e-11 73.6 192 54.2
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 2.0e-11 73.6 183 55.2
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.7e-11 73.2 184 29.3
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.5e-11 72.8 181 53.6
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 4.5e-11 72.4 185 54.6
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 4.5e-11 72.4 194 53.6
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.9e-11 72.0 191 54.5
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.8e-11 71.6 189 54.5
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.0e-10 71.2 192 47.4
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.0e-10 71.2 186 47.8
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.0e-10 71.2 185 52.4
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.3e-10 70.9 179 54.2
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.7e-10 70.5 187 54.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.7e-10 70.5 182 54.4
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.3e-10 70.1 193 53.4
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.3e-10 70.1 193 53.4
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.3e-10 70.1 200 46.5
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 3.8e-10 69.3 195 46.7
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 3.8e-10 69.3 202 44.1
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 3.8e-10 69.3 196 49.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 3.8e-10 69.3 195 51.3
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.8e-10 69.3 166 56.6
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-10 68.9 191 48.2
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.0e-10 68.9 185 52.4
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.0e-10 68.9 183 54.6
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 5.0e-10 68.9 61 55.7
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.0e-10 68.9 181 52.5
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 5.0e-10 68.9 184 53.8
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.0e-10 68.9 101 43.6
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 6.6e-10 68.6 101 41.6
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 6.6e-10 68.6 175 38.9
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 8.6e-10 68.2 197 45.7
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.1e-09 67.8 189 50.3
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.5e-09 67.4 183 55.2
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.5e-09 67.4 94 47.9
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.5e-09 67.4 181 51.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.5e-09 67.4 187 52.9
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.9e-09 67.0 197 51.8
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.9e-09 67.0 197 51.8
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.9e-09 67.0 177 55.9
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.9e-09 67.0 188 55.3
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 2.5e-09 66.6 194 45.9
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.5e-09 66.6 185 53.5
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 2.5e-09 66.6 184 52.7
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 3.3e-09 66.2 188 53.7
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 3.3e-09 66.2 129 47.3
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 4.3e-09 65.9 98 41.8
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 4.3e-09 65.9 187 51.9
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 7.3e-09 65.1 193 46.1
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 7.3e-09 65.1 181 54.7
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 9.5e-09 64.7 185 53.5
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 9.5e-09 64.7 185 53.5
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 9.5e-09 64.7 81 45.7
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 9.5e-09 64.7 101 40.6
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 9.5e-09 64.7 220 46.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 9.5e-09 64.7 95 42.1
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.2e-08 64.3 193 46.6
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.2e-08 64.3 94 39.4
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.2e-08 64.3 197 51.3
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.2e-08 64.3 187 53.5
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.6e-08 63.9 191 51.3
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.1e-08 63.5 193 45.1
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.1e-08 63.5 195 35.9
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 2.8e-08 63.2 98 40.8
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.8e-08 63.2 80 45.0
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 3.6e-08 62.8 198 50.5
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 4.7e-08 62.4 187 55.1
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 4.7e-08 62.4 88 43.2
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 6.1e-08 62.0 100 40.0
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 8.0e-08 61.6 151 53.6
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 8.0e-08 61.6 151 53.6
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 8.0e-08 61.6 151 53.6
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 8.0e-08 61.6 151 53.6
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 8.0e-08 61.6 197 50.8
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.0e-08 61.6 197 50.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 8.0e-08 61.6 95 44.2
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 8.0e-08 61.6 88 45.5
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.0e-07 61.2 195 50.3
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 1.0e-07 61.2 98 40.8
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.0e-07 61.2 166 42.8
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.0e-07 61.2 94 41.5
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.4e-07 60.8 188 48.4
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.4e-07 60.8 194 38.1
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.8e-07 60.5 188 50.5
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.8e-07 60.5 188 53.7
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.8e-07 60.5 96 41.7
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-07 60.1 163 27.6
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 2.3e-07 60.1 69 43.5
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.3e-07 60.1 95 42.1
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.3e-07 60.1 191 52.4
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 4.0e-07 59.3 172 38.4
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 6.8e-07 58.5 95 37.9
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 6.8e-07 58.5 178 52.2
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 1.2e-06 57.8 135 60.7
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.2e-06 57.8 193 50.3
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.5e-06 57.4 151 55.6
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.5e-06 57.4 151 55.6
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.6e-06 56.6 74 45.9
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.4e-06 56.2 64 48.4
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 3.4e-06 56.2 64 48.4
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 4.4e-06 55.8 210 50.0
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.7e-06 55.5 142 59.2


User provided reference genes

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