Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 0.0e+00 1805.4 1115 100.0
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 5.1e-40 171.0 397 36.0
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.5e-23 115.5 182 37.9
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 5.7e-23 114.4 177 39.0
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 7.4e-23 114.0 182 40.1
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 7.4e-23 114.0 186 37.6
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.7e-22 112.8 244 32.4
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 2.2e-22 112.5 177 37.3
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.2e-22 112.5 274 32.1
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 2.8e-22 112.1 177 37.3
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 3.7e-22 111.7 179 37.4
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 3.7e-22 111.7 177 37.3
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 4.8e-22 111.3 186 36.6
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 4.8e-22 111.3 177 36.7
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 4.8e-22 111.3 177 36.7
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 6.3e-22 110.9 177 37.9
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 6.3e-22 110.9 177 38.4
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 8.2e-22 110.5 177 36.7
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 8.2e-22 110.5 176 38.1
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 1.8e-21 109.4 177 35.6
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.8e-21 109.4 179 37.4
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.8e-21 109.4 177 37.3
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.8e-21 109.4 176 37.5
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.8e-21 109.4 278 31.3
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.8e-21 109.4 234 32.5
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 3.1e-21 108.6 177 34.5
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 3.1e-21 108.6 179 35.8
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 3.1e-21 108.6 273 31.5
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 4.1e-21 108.2 406 26.6
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 4.1e-21 108.2 177 36.7
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 4.1e-21 108.2 177 37.3
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 5.3e-21 107.8 273 31.1
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 6.9e-21 107.5 179 36.3
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 9.1e-21 107.1 179 35.8
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.1e-21 107.1 181 36.5
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 9.1e-21 107.1 395 25.8
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 9.1e-21 107.1 179 36.9
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 1.2e-20 106.7 177 36.7
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 1.2e-20 106.7 179 35.8
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.5e-20 106.3 273 30.4
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 5.9e-20 104.4 179 34.6
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 7.7e-20 104.0 273 31.1
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 7.7e-20 104.0 176 35.2
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 7.7e-20 104.0 179 34.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 7.7e-20 104.0 177 36.2
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.0e-19 103.6 273 31.5
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.3e-19 103.2 177 35.0
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.3e-19 103.2 177 36.2
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.3e-19 103.2 87 56.3
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.3e-19 103.2 235 30.6
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.7e-19 102.8 189 36.0
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.7e-19 102.8 177 33.9
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.7e-19 102.8 177 34.5
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.7e-19 102.8 177 35.0
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.2e-19 102.4 276 30.1
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 2.2e-19 102.4 179 34.6
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.2e-19 102.4 177 36.2
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.2e-19 102.4 177 34.5
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 2.2e-19 102.4 172 37.2
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 2.9e-19 102.1 178 34.8
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.9e-19 102.1 226 31.9
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.8e-19 101.7 87 54.0
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 3.8e-19 101.7 282 33.3
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 3.8e-19 101.7 179 35.2
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 5.0e-19 101.3 176 35.8
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 6.5e-19 100.9 178 34.3
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 6.5e-19 100.9 203 34.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 6.5e-19 100.9 235 30.6
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 6.5e-19 100.9 113 49.6
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.5e-19 100.9 235 31.9
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 6.5e-19 100.9 273 30.4
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 8.5e-19 100.5 177 34.5
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.5e-19 100.5 273 31.5
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 8.5e-19 100.5 177 35.0
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 8.5e-19 100.5 321 28.0
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 8.5e-19 100.5 273 30.4
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.1e-18 100.1 275 30.2
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.1e-18 100.1 278 29.5
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.4e-18 99.8 177 35.0
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 1.9e-18 99.4 137 43.8
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.9e-18 99.4 172 35.5
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 1.9e-18 99.4 274 29.6
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 2.5e-18 99.0 95 52.6
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 2.5e-18 99.0 95 52.6
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 3.2e-18 98.6 230 31.3
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 3.2e-18 98.6 230 31.3
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 3.2e-18 98.6 103 51.5
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.2e-18 98.2 185 37.3
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 4.2e-18 98.2 177 35.0
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 5.5e-18 97.8 230 31.3
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 5.5e-18 97.8 273 30.0
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 5.5e-18 97.8 273 29.3
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.2e-17 96.7 273 29.7
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.6e-17 96.3 275 30.2
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.1e-17 95.9 145 39.3
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 2.1e-17 95.9 131 42.0
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.7e-17 95.5 145 40.0
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.7e-17 95.5 87 50.6
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 4.7e-17 94.7 87 51.7
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 7.9e-17 94.0 236 30.1
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 7.9e-17 94.0 183 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.4e-16 93.2 298 28.2
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.4e-16 93.2 303 29.0
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.8e-16 92.8 87 49.4
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 2.3e-16 92.4 81 55.6
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.3e-16 92.4 82 51.2
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 2.3e-16 92.4 275 29.8
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 3.0e-16 92.0 273 28.2
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 8.8e-16 90.5 176 31.8
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 3.3e-15 88.6 86 51.2
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.3e-15 88.6 86 51.2
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 3.3e-15 88.6 87 46.0
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 5.7e-15 87.8 86 50.0
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 9.7e-15 87.0 81 50.6
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.0e-12 79.3 87 43.7
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.0e-11 77.0 84 44.0
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.5e-10 71.2 67 50.7
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.5e-10 71.2 60 55.0
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.3e-08 65.9 57 52.6
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.2e-08 64.7 68 47.1
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 4.4e-07 61.6 166 31.3
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 7.4e-07 60.8 132 32.6
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 7.4e-07 60.8 52 53.8
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 7.4e-07 60.8 133 31.6


User provided reference genes

Program Settings