Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.3e-51 205.3 106 100.0
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 9.8e-18 93.6 96 51.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.3e-17 93.2 81 58.0
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.1e-16 90.1 89 53.9
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.9e-16 89.4 89 53.9
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.9e-16 89.4 99 49.5
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.2e-16 88.6 99 50.5
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 3.2e-16 88.6 89 53.9
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 5.4e-16 87.8 94 50.0
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.1e-16 87.4 99 46.5
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 9.2e-16 87.0 89 55.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 9.2e-16 87.0 89 52.8
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.6e-15 86.3 81 54.3
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.1e-15 85.9 81 51.9
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.7e-15 85.5 82 56.1
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 2.7e-15 85.5 97 48.5
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.7e-15 85.5 97 51.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.5e-15 85.1 81 53.1
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.5e-15 85.1 99 45.5
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 3.5e-15 85.1 97 49.5
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 51.9
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 51.9
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 51.9
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 51.9
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 51.9
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 53.1
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 4.6e-15 84.7 81 51.9
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 4.6e-15 84.7 89 50.6
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 4.6e-15 84.7 97 48.5
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 6.0e-15 84.3 97 47.4
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 6.0e-15 84.3 99 44.4
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 6.0e-15 84.3 99 46.5
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.8e-15 84.0 81 51.9
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 7.8e-15 84.0 99 44.4
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.0e-14 83.6 74 54.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.0e-14 83.6 81 51.9
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.0e-14 83.6 97 46.4
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.0e-14 83.6 81 53.1
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.3e-14 83.2 81 51.9
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.3e-14 83.2 81 51.9
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.7e-14 82.8 81 51.9
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.7e-14 82.8 81 51.9
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.7e-14 82.8 89 50.6
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.7e-14 82.8 97 48.5
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.7e-14 82.8 97 47.4
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.7e-14 82.8 97 47.4
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-14 82.8 81 49.4
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-14 82.8 81 49.4
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.0e-14 82.0 81 51.9
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.0e-14 82.0 81 51.9
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 3.0e-14 82.0 81 50.6
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.0e-14 82.0 81 50.6
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 3.0e-14 82.0 81 50.6
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.0e-14 82.0 78 52.6
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.0e-14 82.0 97 46.4
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.9e-14 81.6 99 46.5
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.9e-14 81.6 97 45.4
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 3.9e-14 81.6 81 51.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 5.1e-14 81.3 81 51.9
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.1e-14 81.3 89 49.4
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 5.1e-14 81.3 81 53.1
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 6.6e-14 80.9 81 48.1
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 6.6e-14 80.9 98 44.9
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 6.6e-14 80.9 97 47.4
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 6.6e-14 80.9 97 44.3
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 6.6e-14 80.9 81 53.1
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 6.6e-14 80.9 99 43.4
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 6.6e-14 80.9 81 51.9
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 6.6e-14 80.9 81 51.9
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 6.6e-14 80.9 99 43.4
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 6.6e-14 80.9 71 53.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.6e-14 80.9 81 51.9
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 6.6e-14 80.9 97 45.4
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.1e-13 80.1 97 45.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.1e-13 80.1 98 44.9
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.1e-13 80.1 81 48.1
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.1e-13 80.1 97 45.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.1e-13 80.1 99 42.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.1e-13 80.1 99 44.4
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.5e-13 79.7 81 49.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.5e-13 79.7 81 50.6
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.5e-13 79.7 97 45.4
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.9e-13 79.3 81 48.1
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.9e-13 79.3 97 44.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.9e-13 79.3 72 48.6
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.9e-13 79.3 81 51.9
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.9e-13 79.3 81 50.6
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.5e-13 79.0 81 49.4
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 2.5e-13 79.0 81 48.1
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.5e-13 79.0 81 50.6
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.5e-13 79.0 81 49.4
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.3e-13 78.6 97 44.3
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.3e-13 78.2 71 54.9
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 4.3e-13 78.2 69 58.0
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.3e-13 78.2 97 43.3
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 5.6e-13 77.8 81 48.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.6e-13 77.8 77 48.1
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 7.3e-13 77.4 82 52.4
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 7.3e-13 77.4 81 50.6
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 7.3e-13 77.4 81 46.9
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 9.5e-13 77.0 81 46.9
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.6e-12 76.3 81 48.1
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 2.1e-12 75.9 81 48.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.1e-12 75.9 81 48.1
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.1e-12 75.9 81 44.4
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.1e-12 75.9 81 44.4
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 44.4
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 2.8e-12 75.5 81 48.1
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 6.2e-12 74.3 81 48.1
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 6.2e-12 74.3 81 48.1
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 6.2e-12 74.3 97 44.3
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.1e-11 73.6 81 46.9
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.1e-11 73.6 99 41.4
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.4e-11 73.2 59 57.6
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.8e-11 72.8 89 44.9
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.3e-09 66.6 82 43.9
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.8e-09 65.1 67 47.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.1e-07 59.3 59 47.5
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.0e-06 57.0 81 43.2
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.0e-06 57.0 59 47.5


User provided reference genes

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