Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 0.0e+00 1097.4 567 100.0
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 5.0e-185 651.7 428 76.9
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.2e-184 648.7 454 71.8
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.3e-182 642.9 520 67.5
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 5.6e-176 621.7 460 69.6
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.6e-175 620.2 430 72.6
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 6.1e-175 618.2 427 74.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 3.1e-174 615.9 430 71.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.3e-172 610.5 436 70.6
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 2.2e-172 609.8 430 71.4
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 2.9e-172 609.4 432 70.6
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.4e-171 607.1 436 69.7
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.9e-171 606.7 432 71.3
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.9e-171 606.7 443 69.8
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.4e-171 606.3 430 70.7
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 2.4e-171 606.3 430 70.7
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 5.4e-171 605.1 438 70.1
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 5.4e-171 605.1 442 68.6
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 9.2e-171 604.4 490 64.7
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.2e-171 604.4 430 70.5
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 9.2e-171 604.4 467 66.0
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 1.6e-170 603.6 434 70.3
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.6e-170 603.6 435 70.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.0e-170 603.2 442 70.4
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 2.0e-170 603.2 435 68.7
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.7e-170 602.8 430 70.5
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.5e-170 602.4 434 69.8
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 3.5e-170 602.4 444 70.0
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 4.6e-170 602.1 466 67.0
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 4.6e-170 602.1 465 66.2
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.6e-170 602.1 430 71.2
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 4.6e-170 602.1 451 69.0
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 6.0e-170 601.7 430 70.2
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 7.8e-170 601.3 437 68.9
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.8e-170 601.3 436 69.0
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.0e-169 600.9 435 69.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.3e-169 600.5 430 70.2
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.3e-169 600.5 434 69.8
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.3e-169 599.7 435 69.7
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.3e-169 599.7 430 71.2
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 3.0e-169 599.4 432 69.7
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.0e-169 599.4 436 69.3
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 3.9e-169 599.0 430 69.8
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 5.0e-169 598.6 434 69.1
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.6e-169 598.2 426 70.4
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 6.6e-169 598.2 447 68.0
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 8.6e-169 597.8 443 68.4
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 8.6e-169 597.8 442 67.9
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 8.6e-169 597.8 475 64.8
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 8.6e-169 597.8 430 69.8
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.5e-168 597.0 437 68.9
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.5e-168 597.0 430 69.5
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.5e-168 597.0 430 70.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.9e-168 596.7 469 65.5
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.9e-168 596.7 430 69.8
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.5e-168 596.3 469 65.5
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.5e-168 596.3 469 65.2
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 3.3e-168 595.9 436 68.6
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 3.3e-168 595.9 434 68.4
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.3e-168 595.9 430 69.5
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.3e-168 595.5 434 68.7
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 4.3e-168 595.5 435 69.7
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 5.6e-168 595.1 434 69.1
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 5.6e-168 595.1 430 69.8
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 5.6e-168 595.1 440 69.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.3e-168 594.7 436 69.5
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 7.3e-168 594.7 443 67.7
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 7.3e-168 594.7 430 70.2
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 9.5e-168 594.3 430 69.8
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 9.5e-168 594.3 430 69.5
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.2e-167 594.0 443 67.3
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 1.2e-167 594.0 430 69.3
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.1e-167 593.2 430 69.3
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.7e-167 592.0 443 67.7
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 6.2e-167 591.7 429 70.9
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 8.0e-167 591.3 430 69.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.0e-167 591.3 429 69.0
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 1.1e-166 590.9 430 69.5
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.1e-166 590.9 439 67.4
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.4e-166 590.5 430 68.6
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.4e-166 590.5 430 69.5
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 3.1e-166 589.3 434 68.2
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 3.1e-166 589.3 434 68.2
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 3.1e-166 589.3 430 69.5
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 4.0e-166 589.0 430 69.3
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.2e-166 588.6 430 69.1
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 5.2e-166 588.6 441 67.6
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.8e-166 588.2 430 69.3
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 6.8e-166 588.2 441 67.6
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 6.8e-166 588.2 430 69.5
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-165 587.4 430 68.6
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.2e-165 587.4 436 67.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 2.0e-165 586.6 434 68.0
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 2.6e-165 586.3 473 64.5
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 3.4e-165 585.9 430 68.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.8e-165 585.1 443 66.6
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 7.5e-165 584.7 443 66.6
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 7.5e-165 584.7 434 68.7
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 9.8e-165 584.3 434 67.7
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 9.8e-165 584.3 441 67.1
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 9.8e-165 584.3 434 67.7
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 9.8e-165 584.3 453 66.4
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.3e-164 583.9 430 68.6
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.9e-164 582.8 437 67.5
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.9e-164 582.8 430 69.8
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.9e-164 582.0 445 66.1
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 6.4e-164 581.6 430 68.6
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-163 580.9 434 67.5
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.4e-163 580.5 430 69.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 2.4e-163 579.7 430 68.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.2e-163 579.3 430 67.9
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 7.1e-163 578.2 430 68.6
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 9.2e-163 577.8 468 65.0
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.6e-162 577.0 430 68.1
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 6.0e-162 575.1 462 64.7
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 6.0e-162 575.1 443 67.5
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.8e-159 566.2 430 67.4
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 4.7e-159 565.5 456 64.9
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 2.3e-158 563.1 404 70.8
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.6e-157 559.7 434 66.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.2e-156 556.6 474 62.2
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 6.4e-156 555.1 434 65.7
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.1e-155 554.3 460 63.7
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.9e-155 553.5 434 65.9
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.6e-151 539.3 381 71.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.8e-143 513.1 430 62.6
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.8e-126 457.2 362 64.1
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.9e-123 447.2 330 71.2
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.3e-123 444.9 474 53.4
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-120 438.0 513 47.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.7e-116 424.1 316 68.0
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-116 423.3 319 67.1
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 3.1e-94 350.1 277 67.1
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 5.3e-94 349.4 229 76.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.5e-92 342.4 265 66.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.5e-91 341.3 270 64.4
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.8e-89 334.3 258 67.1
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.2e-69 268.5 395 45.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 7.3e-67 259.2 207 62.8
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 9.5e-67 258.8 202 64.9
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.6e-66 258.1 172 74.4
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 3.6e-66 256.9 423 40.4
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.5e-64 251.5 173 71.7
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 5.2e-57 226.5 183 65.0
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.6e-56 224.2 290 43.8
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 4.6e-53 213.4 219 52.5
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 4.3e-51 206.8 216 53.7
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 6.2e-50 203.0 209 54.5
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-49 201.8 209 54.1
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 3.7e-47 193.7 210 51.9
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 1.4e-46 191.8 190 60.0
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-44 184.9 211 50.2
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 8.6e-44 182.6 116 75.0
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.8e-40 169.9 115 71.3
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.8e-32 143.3 85 82.4
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.2e-29 135.6 81 79.0
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.0e-24 118.2 127 45.7
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 9.6e-19 99.4 67 76.1
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.0e-16 91.7 161 36.6
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 5.8e-16 90.1 65 72.3
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.7e-15 88.6 93 45.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.8e-12 78.6 57 70.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.3e-12 78.2 126 42.9
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 5.1e-12 77.0 202 33.2
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.4e-11 73.2 54 68.5
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.3e-10 72.4 135 36.3
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.4e-09 68.2 48 77.1
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.2e-08 65.9 78 47.4
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.5e-08 65.5 69 59.4
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 2.0e-08 65.1 42 78.6
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 6.5e-07 60.1 37 83.8
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 2.5e-06 58.2 58 44.8
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 3.2e-06 57.8 31 87.1
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 9.3e-06 56.2 41 68.3


User provided reference genes

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