Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 2.6e-65 251.9 126 100.0
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 4.0e-42 174.9 123 67.5
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 2.9e-40 168.7 126 67.5
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 8.3e-40 167.2 119 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 5.1e-37 157.9 123 62.6
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 9.9e-33 143.7 114 63.2
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 1.3e-32 143.3 121 59.5
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.5e-30 135.2 112 59.8
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 1.0e-29 133.7 120 55.0
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 1.7e-29 132.9 119 57.1
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 3.0e-29 132.1 119 56.3
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 3.0e-29 132.1 119 57.1
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 8.6e-29 130.6 123 53.7
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.1e-28 130.2 120 54.2
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 2.5e-28 129.0 119 56.3
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 2.5e-28 129.0 119 56.3
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 2.5e-28 129.0 119 56.3
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 2.5e-28 129.0 123 53.7
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 2.5e-28 129.0 123 53.7
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 2.5e-28 129.0 126 54.8
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 2.5e-28 129.0 123 53.7
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 2.5e-28 129.0 126 54.8
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 3.3e-28 128.6 123 53.7
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 3.3e-28 128.6 123 53.7
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 4.3e-28 128.3 120 52.5
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 4.3e-28 128.3 120 53.3
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 5.6e-28 127.9 120 52.5
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 5.6e-28 127.9 121 51.2
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 5.6e-28 127.9 123 52.8
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 5.6e-28 127.9 123 50.4
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 5.6e-28 127.9 127 53.5
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 7.3e-28 127.5 116 57.8
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 7.3e-28 127.5 113 57.5
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 9.6e-28 127.1 119 54.6
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 9.6e-28 127.1 119 54.6
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 9.6e-28 127.1 119 54.6
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 9.6e-28 127.1 123 52.8
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 9.6e-28 127.1 123 52.0
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 1.2e-27 126.7 126 55.6
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 1.2e-27 126.7 119 54.6
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 1.6e-27 126.3 119 52.1
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 1.6e-27 126.3 123 52.0
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 1.6e-27 126.3 123 52.0
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 1.6e-27 126.3 123 51.2
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 2.1e-27 125.9 116 55.2
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 2.1e-27 125.9 119 53.8
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 2.1e-27 125.9 123 50.4
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 2.8e-27 125.6 123 50.4
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 2.8e-27 125.6 123 49.6
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 2.8e-27 125.6 120 51.7
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 3.6e-27 125.2 123 52.8
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 3.6e-27 125.2 123 52.0
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 3.6e-27 125.2 123 52.0
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 4.7e-27 124.8 123 51.2
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.7e-27 124.8 119 52.9
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 4.7e-27 124.8 120 54.2
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 6.2e-27 124.4 120 52.5
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 8.1e-27 124.0 116 56.0
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 8.1e-27 124.0 123 50.4
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.1e-26 123.6 116 55.2
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 1.1e-26 123.6 123 52.8
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 1.4e-26 123.2 123 51.2
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.4e-26 123.2 123 51.2
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 1.4e-26 123.2 123 52.8
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 1.4e-26 123.2 123 50.4
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 1.8e-26 122.9 119 51.3
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 1.8e-26 122.9 123 49.6
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 1.8e-26 122.9 123 52.8
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 2.4e-26 122.5 120 53.3
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 2.4e-26 122.5 119 52.9
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 3.1e-26 122.1 126 52.4
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 3.1e-26 122.1 116 54.3
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 4.0e-26 121.7 119 52.1
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 4.0e-26 121.7 126 52.4
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 5.2e-26 121.3 123 48.8
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 5.2e-26 121.3 119 52.9
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 5.2e-26 121.3 119 50.4
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 5.2e-26 121.3 116 52.6
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 5.2e-26 121.3 120 52.5
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 5.2e-26 121.3 119 50.4
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 6.8e-26 120.9 123 48.0
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 6.8e-26 120.9 120 51.7
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 6.8e-26 120.9 116 55.2
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 8.9e-26 120.6 119 52.1
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 8.9e-26 120.6 116 53.4
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 50.4
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 50.4
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 50.4
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 1.2e-25 120.2 119 50.4
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 1.2e-25 120.2 116 55.2
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 1.2e-25 120.2 116 54.3
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 1.5e-25 119.8 119 52.9
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 1.5e-25 119.8 120 52.5
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 1.5e-25 119.8 120 52.5
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 1.5e-25 119.8 119 50.4
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.5e-25 119.8 110 55.5
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 2.0e-25 119.4 123 47.2
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 2.6e-25 119.0 119 48.7
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 2.6e-25 119.0 123 48.8
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.6e-25 119.0 116 55.2
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 3.4e-25 118.6 119 49.6
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 3.4e-25 118.6 116 54.3
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 3.4e-25 118.6 116 53.4
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 5.8e-25 117.9 119 50.4
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 5.8e-25 117.9 119 49.6
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 5.8e-25 117.9 119 48.7
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 7.6e-25 117.5 120 49.2
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 7.6e-25 117.5 123 48.8
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 9.9e-25 117.1 120 49.2
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 1.7e-24 116.3 116 52.6
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.7e-24 116.3 116 53.4
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 1.7e-24 116.3 116 53.4
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 1.7e-24 116.3 127 51.2
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 2.2e-24 115.9 116 51.7
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 2.2e-24 115.9 119 48.7
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 3.8e-24 115.2 124 52.4
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 4.9e-24 114.8 119 48.7
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 4.9e-24 114.8 116 51.7
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 4.9e-24 114.8 115 51.3
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 4.9e-24 114.8 113 51.3
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 6.4e-24 114.4 120 52.5
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 8.4e-24 114.0 116 50.9
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 8.4e-24 114.0 121 47.9
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 8.4e-24 114.0 116 51.7
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 8.4e-24 114.0 116 51.7
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 8.4e-24 114.0 127 49.6
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 1.1e-23 113.6 119 47.9
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.4e-23 113.2 139 43.2
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 1.4e-23 113.2 121 48.8
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 2.4e-23 112.5 121 47.9
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 3.2e-23 112.1 126 47.6
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 3.2e-23 112.1 125 48.8
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 3.2e-23 112.1 116 51.7
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 5.4e-23 111.3 121 46.3
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 5.4e-23 111.3 121 45.5
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 7.1e-23 110.9 121 46.3
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 9.3e-23 110.5 136 48.5
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 1.2e-22 110.2 97 56.7
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 1.2e-22 110.2 97 56.7
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.6e-22 109.8 91 58.2
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 1.6e-22 109.8 119 47.9
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 2.1e-22 109.4 96 55.2
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 3.5e-22 108.6 98 55.1
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 6.0e-22 107.8 103 49.5
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 1.7e-21 106.3 98 51.0
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 1.7e-21 106.3 102 49.0
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 2.3e-21 105.9 100 51.0
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 3.0e-21 105.5 91 54.9
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 3.9e-21 105.1 94 59.6
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 1.1e-20 103.6 95 54.7
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 1.5e-20 103.2 150 40.0
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 1.5e-20 103.2 97 51.5
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.9e-20 102.8 91 51.6
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.5e-20 102.4 97 50.5
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 4.3e-20 101.7 101 51.5
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 5.6e-20 101.3 142 43.7
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 5.6e-20 101.3 119 47.1
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 7.3e-20 100.9 119 47.1
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 1.6e-19 99.8 94 52.1
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 2.8e-19 99.0 116 50.0
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 6.2e-19 97.8 99 50.5
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 8.1e-19 97.4 89 53.9
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 3.1e-18 95.5 78 59.0
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 5.3e-18 94.7 77 55.8
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 7.6e-17 90.9 188 34.6
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 9.9e-17 90.5 75 56.0
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.7e-16 89.7 81 55.6
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.7e-16 89.7 91 50.5
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 6.4e-16 87.8 77 57.1
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 8.4e-16 87.4 84 50.0
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 9.3e-15 84.0 87 48.3
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 9.3e-15 84.0 77 54.5
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 9.3e-15 84.0 77 54.5
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 1.3e-13 80.1 72 55.6
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 1.7e-13 79.7 82 52.4
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 6.6e-13 77.8 80 50.0
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.6e-11 73.2 77 49.4
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.1e-11 72.8 98 44.9
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 1.1e-10 70.5 74 52.7
AUR62030679 Chenopodium quinoa HOM05D003627 ORTHO05D004307 2.1e-06 56.2 81 43.2


User provided reference genes

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