Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8886 Chara braunii HOM05D007118 ORTHO05D008957 0.0e+00 1348.6 671 100.0
Mapoly0051s0046 Marchantia polymorpha HOM05D007118 ORTHO05D008957 2.4e-93 347.4 665 31.6
Pp3c3_25440 Physcomitrium patens HOM05D007118 ORTHO05D008957 3.0e-88 330.5 675 32.4
AagrBONN_evm.TU.Sc2ySwM_344.3877 Anthoceros agrestis HOM05D007118 ORTHO05D008957 1.6e-84 318.2 682 31.2
Potri.017G078700 Populus trichocarpa HOM05D007118 ORTHO05D008957 4.7e-81 306.6 681 30.5
PGSC0003DMG400018098 Solanum tuberosum HOM05D007118 ORTHO05D008957 1.4e-80 305.1 704 31.0
TAR629G0502 Trochodendron aralioides HOM05D007118 ORTHO05D008957 4.0e-80 303.5 676 31.5
Cc07_g03080 Coffea canephora HOM05D007118 ORTHO05D008957 8.8e-80 302.4 674 31.0
Sopen02g032450 Solanum pennellii HOM05D007118 ORTHO05D008957 2.0e-79 301.2 675 31.3
Sabra17G0069800 Salix brachista HOM05D007118 ORTHO05D008957 7.5e-79 299.3 680 30.1
TAR374G0129 Trochodendron aralioides HOM05D007118 ORTHO05D008957 9.8e-79 298.9 671 31.9
Solyc02g087720.1 Solanum lycopersicum HOM05D007118 ORTHO05D008957 1.3e-78 298.5 675 31.0
Manes.15G176912 Manihot esculenta HOM05D007118 ORTHO05D008957 8.3e-78 295.8 681 30.5
CSS0004252 Camellia sinensis var. sinensis HOM05D007118 ORTHO05D008957 2.4e-77 294.3 679 31.8
CiPaw.03G029400 Carya illinoinensis HOM05D007118 ORTHO05D008957 3.1e-77 293.9 681 30.5
Aqoxy3G00736 Aquilegia oxysepala HOM05D007118 ORTHO05D008957 5.4e-77 293.1 675 30.4
CAN.G206.124 Capsicum annuum HOM05D007118 ORTHO05D008957 5.4e-77 293.1 679 31.1
TWI32G0076 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 1.6e-76 291.6 685 30.4
Prupe.3G271300 Prunus persica HOM05D007118 ORTHO05D008957 1.3e-75 288.5 527 33.6
RcHm_v2.0_Chr2g0169061 Rosa chinensis HOM05D007118 ORTHO05D008957 1.3e-75 288.5 531 33.3
Gorai.006G025500 Gossypium raimondii HOM05D007118 ORTHO05D008957 2.3e-75 287.7 673 31.8
Rhsim08G0066600 Rhododendron simsii HOM05D007118 ORTHO05D008957 2.9e-75 287.3 670 31.6
Nn4g23068 Nelumbo nucifera HOM05D007118 ORTHO05D008957 6.6e-75 286.2 659 32.0
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 6.6e-75 286.2 636 30.2
TWI60G1543 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 6.6e-75 286.2 577 32.2
TWI32G0789 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 1.5e-74 285.0 577 32.4
PGR083G1725 Punica granatum HOM05D007118 ORTHO05D008957 1.9e-74 284.6 671 30.6
AUR62031637 Chenopodium quinoa HOM05D007118 ORTHO05D008957 2.5e-74 284.3 679 29.9
FvH4_6g49180 Fragaria vesca HOM05D007118 ORTHO05D008957 2.5e-74 284.3 531 32.6
A06p40390 Brassica napus HOM05D007118 ORTHO05D008957 3.3e-74 283.9 676 31.7
BraA06t26957Z Brassica rapa HOM05D007118 ORTHO05D008957 3.3e-74 283.9 676 31.7
FAN14G3290 Fragaria x ananassa HOM05D007118 ORTHO05D008957 3.3e-74 283.9 531 32.4
Sc14g0006000 Simmondsia chinensis HOM05D007118 ORTHO05D008957 3.3e-74 283.9 691 30.1
Cpa.g.sc14.37 Carica papaya HOM05D007118 ORTHO05D008957 4.2e-74 283.5 598 30.6
DCAR_011156 Daucus carota HOM05D007118 ORTHO05D008957 5.5e-74 283.1 676 31.1
Cfa007517 Carpinus fangiana HOM05D007118 ORTHO05D008957 7.2e-74 282.7 671 30.1
Lsat_1_v5_gn_2_88681 Lactuca sativa HOM05D007118 ORTHO05D008957 7.2e-74 282.7 677 30.7
SMO071G0001 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 7.2e-74 282.7 631 30.1
AUR62038867 Chenopodium quinoa HOM05D007118 ORTHO05D008957 9.5e-74 282.3 533 32.6
FAN02G1928 Fragaria x ananassa HOM05D007118 ORTHO05D008957 9.5e-74 282.3 522 32.8
FAN09G1522 Fragaria x ananassa HOM05D007118 ORTHO05D008957 1.2e-73 282.0 531 32.4
MD09G1047700 Malus domestica HOM05D007118 ORTHO05D008957 1.6e-73 281.6 577 31.2
ATR1120G196 Amborella trichopoda HOM05D007118 ORTHO05D008957 2.1e-73 281.2 665 29.9
Gohir.D09G021500 Gossypium hirsutum HOM05D007118 ORTHO05D008957 2.8e-73 280.8 673 31.5
MD17G1047800 Malus domestica HOM05D007118 ORTHO05D008957 2.8e-73 280.8 577 30.7
FAN05G1119 Fragaria x ananassa HOM05D007118 ORTHO05D008957 3.6e-73 280.4 531 32.0
Potri.004G123900 Populus trichocarpa HOM05D007118 ORTHO05D008957 4.7e-73 280.0 682 29.6
Peaxi162Scf00129g00042 Petunia axillaris HOM05D007118 ORTHO05D008957 6.1e-73 279.6 693 30.6
CANSAT64G2775 Cannabis sativa HOM05D007118 ORTHO05D008957 2.3e-72 277.7 626 30.2
SalBow1G1856 Salvia bowleyana HOM05D007118 ORTHO05D008957 4.0e-72 276.9 668 31.4
Ciclev10011233m.g Citrus clementina HOM05D007118 ORTHO05D008957 5.2e-72 276.6 679 28.9
Haze_14577 Corylus avellana HOM05D007118 ORTHO05D008957 6.8e-72 276.2 672 30.1
Gohir.A09G022300 Gossypium hirsutum HOM05D007118 ORTHO05D008957 8.9e-72 275.8 673 30.8
PSO591G0390 Papaver somniferum HOM05D007118 ORTHO05D008957 8.9e-72 275.8 663 29.0
Psat1g078560 Pisum sativum HOM05D007118 ORTHO05D008957 8.9e-72 275.8 658 30.2
HanXRQChr14g0449321 Helianthus annuus HOM05D007118 ORTHO05D008957 1.2e-71 275.4 681 30.2
C07p37660 Brassica napus HOM05D007118 ORTHO05D008957 2.0e-71 274.6 678 30.1
BolC7t44283H Brassica oleracea HOM05D007118 ORTHO05D008957 2.0e-71 274.6 678 30.1
ECA238G0821 Erigeron canadensis HOM05D007118 ORTHO05D008957 2.6e-71 274.2 674 30.3
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 3.4e-71 273.9 672 30.5
Sed0001669 Sechium edule HOM05D007118 ORTHO05D008957 3.4e-71 273.9 669 30.0
Hund13237 Selenicereus undatus HOM05D007118 ORTHO05D008957 3.4e-71 273.9 684 29.5
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 4.4e-71 273.5 704 30.1
PSO832G0362 Papaver somniferum HOM05D007118 ORTHO05D008957 1.3e-70 271.9 663 29.1
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 2.8e-70 270.8 566 29.7
Dinv33727 Davidia involucrata HOM05D007118 ORTHO05D008957 3.7e-70 270.4 627 31.1
MELO3C009888.2 Cucumis melo HOM05D007118 ORTHO05D008957 4.9e-70 270.0 573 31.8
HPP92_003624 Vanilla planifolia HOM05D007118 ORTHO05D008957 4.9e-70 270.0 670 30.9
Oeu060923.1 Olea europaea HOM05D007118 ORTHO05D008957 6.3e-70 269.6 684 29.2
EL10Ac2g02939 Beta vulgaris HOM05D007118 ORTHO05D008957 1.1e-69 268.9 674 29.2
QL02p080749 Quercus lobata HOM05D007118 ORTHO05D008957 1.1e-69 268.9 678 29.1
Lj2g0024860 Lotus japonicus HOM05D007118 ORTHO05D008957 1.4e-69 268.5 689 30.3
MSTRG.3219 Avicennia marina HOM05D007118 ORTHO05D008957 1.8e-69 268.1 669 29.4
CsaV3_3G041650 Cucumis sativus L. HOM05D007118 ORTHO05D008957 3.2e-69 267.3 573 31.2
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 7.0e-69 266.2 579 31.4
CDE04G1934 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 7.0e-69 266.2 622 28.9
Medtr6g011480 Medicago truncatula HOM05D007118 ORTHO05D008957 1.0e-67 262.3 544 30.1
Sp2g17370 Schrenkiella parvula HOM05D007118 ORTHO05D008957 1.0e-67 262.3 677 29.1
Atru.chr8.1899 Acer truncatum HOM05D007118 ORTHO05D008957 2.3e-67 261.2 684 29.2
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 3.9e-67 260.4 540 31.1
Thecc.04G076000 Theobroma cacao HOM05D007118 ORTHO05D008957 3.9e-67 260.4 662 30.7
Duzib147G0587 Durio zibethinus HOM05D007118 ORTHO05D008957 1.1e-66 258.8 533 31.3
TPR.G4266 Trifolium pratense HOM05D007118 ORTHO05D008957 1.5e-66 258.5 693 28.3
Ca_04268_v3 Cicer arietinum L. HOM05D007118 ORTHO05D008957 3.3e-66 257.3 549 30.1
Actinidia10548 Actinidia chinensis HOM05D007118 ORTHO05D008957 4.3e-66 256.9 649 31.4
Lalb_Chr02g0159561 Lupinus albus HOM05D007118 ORTHO05D008957 4.3e-66 256.9 586 30.0
Ah.12g065380 Amaranthus hybridus HOM05D007118 ORTHO05D008957 7.3e-66 256.1 671 28.3
THA.LOC104805448 Tarenaya hassleriana HOM05D007118 ORTHO05D008957 1.6e-65 255.0 573 30.0
AT3G28720 Arabidopsis thaliana HOM05D007118 ORTHO05D008957 2.1e-65 254.6 675 28.3
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 2.8e-65 254.2 673 28.2
CARHR151700 Cardamine hirsuta HOM05D007118 ORTHO05D008957 2.8e-65 254.2 572 30.6
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 2.8e-65 254.2 702 29.2
Aa31LG2G4490 Aethionema arabicum HOM05D007118 ORTHO05D008957 1.4e-64 251.9 705 27.9
Migut.H00894 Erythranthe guttata HOM05D007118 ORTHO05D008957 5.2e-64 250.0 485 32.0
ClCG10G014860 Citrullus lanatus HOM05D007118 ORTHO05D008957 1.2e-63 248.8 573 29.7
Phvul.004G026600 Phaseolus vulgaris HOM05D007118 ORTHO05D008957 1.5e-63 248.4 688 28.6
VMungo0464G1357 Vigna mungo HOM05D007118 ORTHO05D008957 5.8e-63 246.5 688 28.1
Glyma.19G020300 Glycine max HOM05D007118 ORTHO05D008957 1.3e-62 245.4 486 31.7
Lju41C25G1 Lonicera japonica HOM05D007118 ORTHO05D008957 3.2e-61 240.7 445 32.6
Nitab4.5_0000564g0280 Nicotiana tabacum HOM05D007118 ORTHO05D008957 3.3e-50 204.1 326 36.5
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 3.6e-49 200.7 446 31.8
Nitab4.5_0009739g0010 Nicotiana tabacum HOM05D007118 ORTHO05D008957 1.7e-46 191.8 300 35.7
Glyma.13G064602 Glycine max HOM05D007118 ORTHO05D008957 1.3e-38 165.6 224 36.6
MCO07G741 Micromonas commoda HOM05D007118 ORTHO05D008957 6.4e-38 163.3 766 25.3
SMO244G0004 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 2.7e-36 157.9 247 33.2
SMO244G0083 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 2.7e-36 157.9 247 33.2
SMO244G0031 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.3e-35 155.6 247 32.8
Cre02.g081650 Chlamydomonas reinhardtii HOM05D007118 ORTHO05D008957 9.0e-32 142.9 638 23.5
Hma1.2p1_2982F.1_g331230 Hydrangea macrophylla HOM05D007118 ORTHO05D008957 6.2e-25 120.2 318 29.6
PRCOL_00001393 Prasinoderma coloniale HOM05D007118 ORTHO05D008957 6.4e-22 110.2 315 28.9
unitig_88.g27704 Utricularia gibba HOM05D002812 ORTHO05D005654 1.3e-11 75.9 389 21.9
Prupe.1G115700 Prunus persica HOM05D004819 ORTHO05D005654 1.3e-09 69.3 435 19.8
GSVIVG01034978001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.6e-09 68.9 465 20.0
TWI53G0610 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 3.7e-09 67.8 297 24.2
SHI00126 Sapria himalayana HOM05D004819 ORTHO05D005654 8.2e-09 66.6 339 24.5
Cfa015302 Carpinus fangiana HOM05D004819 ORTHO05D005654 1.8e-08 65.5 282 23.4
CiPaw.01G137100 Carya illinoinensis HOM05D004819 ORTHO05D005654 2.4e-08 65.1 297 24.6
Ah.05g176730 Amaranthus hybridus HOM05D004819 ORTHO05D005654 4.1e-08 64.3 461 18.4
Lj3C833T2 Lonicera japonica HOM05D004819 ORTHO05D005654 9.0e-08 63.2 284 25.4
Sed0001798 Sechium edule HOM05D004819 ORTHO05D005654 9.0e-08 63.2 464 20.0
Phvul.003G115600 Phaseolus vulgaris HOM05D004819 ORTHO05D005654 1.5e-07 62.4 348 23.9
Glyma.07G238900 Glycine max HOM05D004819 ORTHO05D005654 3.4e-07 61.2 350 24.3
VMungo1215G1911 Vigna mungo HOM05D004819 ORTHO05D005654 5.8e-07 60.5 348 23.0
Hund03132 Selenicereus undatus HOM05D004819 ORTHO05D005654 7.6e-07 60.1 463 18.8
AUR62039265 Chenopodium quinoa HOM05D004819 ORTHO05D005654 1.3e-06 59.3 425 19.3
ECA233G5711 Erigeron canadensis HOM05D004819 ORTHO05D005654 1.3e-06 59.3 351 21.4
HanXRQChr02g0048601 Helianthus annuus HOM05D004819 ORTHO05D005654 1.3e-06 59.3 347 21.3
Lsat_1_v5_gn_6_1101 Lactuca sativa HOM05D004819 ORTHO05D005654 1.3e-06 59.3 174 25.9
Cc03_g00710 Coffea canephora HOM05D004819 ORTHO05D005654 1.7e-06 58.9 280 24.3
Rhsim04G0240100 Rhododendron simsii HOM05D004819 ORTHO05D005654 1.7e-06 58.9 334 22.5
Thecc.04G302500 Theobroma cacao HOM05D004819 ORTHO05D005654 1.7e-06 58.9 281 23.1
arahy.Tifrunner.gnm1.ann1.ZA4S8T Arachis hypogaea HOM05D004819 ORTHO05D005654 2.9e-06 58.2 347 20.7
Sc09g0007260 Simmondsia chinensis HOM05D004819 ORTHO05D005654 2.9e-06 58.2 137 29.2
FAN07G2526 Fragaria x ananassa HOM05D004819 ORTHO05D005654 3.8e-06 57.8 282 24.5
ClCG05G006610 Citrullus lanatus HOM05D004819 ORTHO05D005654 5.0e-06 57.4 110 36.4
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 6.5e-06 57.0 387 21.4
CARHR222550 Cardamine hirsuta HOM05D004819 ORTHO05D005654 6.5e-06 57.0 327 23.9
Duzib212G0926 Durio zibethinus HOM05D004819 ORTHO05D005654 6.5e-06 57.0 346 22.0
RcHm_v2.0_Chr4g0425571 Rosa chinensis HOM05D004819 ORTHO05D005654 6.5e-06 57.0 285 23.9
Ca_21436_v3 Cicer arietinum L. HOM05D004819 ORTHO05D005654 8.4e-06 56.6 277 22.7
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 8.4e-06 56.6 369 22.2
Sed0007022 Sechium edule HOM05D004819 ORTHO05D005654 8.4e-06 56.6 110 34.5


User provided reference genes

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