Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 0.0e+00 1192.6 1285 100.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.0e-47 196.8 172 62.2
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.8e-47 194.9 163 62.0
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 5.5e-46 191.0 159 59.7
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 7.2e-46 190.7 169 58.6
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.1e-37 162.5 161 54.0
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.1e-37 161.0 147 55.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 3.9e-36 158.3 160 53.1
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.1e-35 156.8 150 54.0
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.5e-35 156.4 139 56.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 3.3e-35 155.2 174 52.3
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 3.3e-35 155.2 174 52.3
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 5.7e-35 154.5 146 54.8
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 9.7e-35 153.7 154 54.5
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.3e-34 153.3 168 49.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.3e-34 153.3 145 53.8
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.8e-34 152.1 143 55.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.8e-34 152.1 144 54.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.7e-34 151.8 169 52.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 3.7e-34 151.8 145 53.8
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 4.8e-34 151.4 147 54.4
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 4.8e-34 151.4 145 53.8
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.8e-34 151.4 179 48.0
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 8.2e-34 150.6 152 53.3
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 8.2e-34 150.6 166 48.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.2e-34 150.6 173 49.7
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.2e-34 150.6 170 49.4
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 8.2e-34 150.6 145 53.8
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.1e-33 150.2 177 46.9
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.1e-33 150.2 169 50.9
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.1e-33 150.2 144 57.6
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.4e-33 149.8 142 55.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.8e-33 149.4 143 55.2
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.4e-33 149.1 144 52.8
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.4e-33 149.1 145 53.1
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.4e-33 149.1 172 50.0
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.1e-33 148.3 143 53.1
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 4.1e-33 148.3 180 45.6
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.3e-33 147.9 152 51.3
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 7.0e-33 147.5 172 48.3
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 7.0e-33 147.5 167 49.1
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 7.0e-33 147.5 163 51.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.2e-32 146.7 178 46.1
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.2e-32 146.7 145 51.7
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.0e-32 146.0 166 47.6
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 2.6e-32 145.6 172 47.7
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 3.5e-32 145.2 145 52.4
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.5e-32 145.2 154 51.9
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.5e-32 145.2 146 51.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 4.5e-32 144.8 142 54.9
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.5e-32 144.8 154 51.3
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.5e-32 144.8 158 51.9
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 5.9e-32 144.4 143 52.4
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.7e-32 144.1 144 51.4
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.0e-31 143.7 180 48.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.0e-31 143.7 147 51.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.3e-31 143.3 157 51.0
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 5.0e-31 141.4 164 50.0
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.5e-31 140.6 180 49.4
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.1e-30 140.2 144 52.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.9e-30 139.4 178 47.8
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.5e-30 139.0 172 48.8
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.2e-30 138.7 146 50.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.2e-30 138.7 146 50.7
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 4.2e-30 138.3 174 46.6
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 4.2e-30 138.3 167 47.9
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.2e-30 137.5 145 51.7
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 7.2e-30 137.5 186 45.2
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 7.2e-30 137.5 145 51.7
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 9.4e-30 137.1 170 49.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.4e-30 137.1 154 50.6
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-29 136.7 178 45.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-29 136.7 178 45.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-29 136.7 178 45.5
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.6e-29 136.3 180 45.6
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.6e-29 136.3 174 46.6
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.1e-29 136.0 165 44.2
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.7e-29 135.6 149 50.3
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 3.6e-29 135.2 171 44.4
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.6e-29 135.2 154 50.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 3.6e-29 135.2 181 44.8
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 4.7e-29 134.8 148 50.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 4.7e-29 134.8 148 50.7
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 4.7e-29 134.8 148 50.7
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.7e-29 134.8 179 46.4
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.7e-29 134.8 148 50.0
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 4.7e-29 134.8 171 46.2
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.7e-29 134.8 144 50.7
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 6.1e-29 134.4 172 49.4
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 8.0e-29 134.0 103 60.2
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-28 133.7 149 49.7
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.0e-28 133.7 149 49.7
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.0e-28 133.7 170 48.8
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.4e-28 133.3 148 50.7
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.4e-28 133.3 153 47.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.8e-28 132.9 106 60.4
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.3e-28 132.5 147 48.3
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 8.8e-28 130.6 170 46.5
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.2e-27 130.2 101 61.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.2e-27 130.2 210 39.5
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.2e-27 130.2 210 39.5
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.6e-27 129.0 172 45.9
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 2.6e-27 129.0 101 60.4
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 2.6e-27 129.0 103 59.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 5.7e-27 127.9 99 60.6
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.5e-27 127.5 116 56.0
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 7.5e-27 127.5 102 62.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.2e-26 125.9 101 58.4
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 8.2e-26 124.0 119 53.8
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.1e-25 122.1 97 60.8
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.1e-25 122.1 179 46.4
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.3e-25 121.3 164 43.3
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.0e-25 120.9 97 56.7
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.0e-24 119.4 177 44.1
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 8.5e-23 114.0 89 59.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.1e-22 113.6 171 47.4
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.5e-22 113.2 129 45.7
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.5e-22 113.2 101 59.4
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.5e-22 112.5 98 57.1
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.2e-22 111.7 101 59.4
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 110.2 101 58.4
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 110.2 102 57.8
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 4.7e-21 108.2 90 58.9
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.1e-21 107.8 139 47.5
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.1e-21 107.8 139 47.5
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 8.0e-21 107.5 168 42.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 8.0e-21 107.5 102 56.9
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.0e-20 107.1 185 40.5
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.0e-20 107.1 101 56.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.4e-20 106.7 104 56.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.4e-20 106.7 109 55.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.0e-19 102.8 168 39.9
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 3.4e-19 102.1 80 60.0
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.5e-19 100.9 107 49.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-18 99.4 133 45.1
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.2e-18 99.4 88 53.4
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-17 96.3 136 42.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.1e-17 95.5 101 51.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.5e-16 92.0 103 47.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 7.7e-16 90.9 118 44.9
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 7.7e-16 90.9 101 48.5
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.6e-15 87.4 105 47.6
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 8.6e-15 87.4 115 45.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.2e-14 85.1 94 54.3
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 9.5e-14 84.0 108 45.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.1e-13 82.8 115 44.3
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 6.1e-13 81.3 107 47.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.8e-12 79.7 96 43.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.3e-12 79.3 105 41.0
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.3e-12 79.3 98 44.9
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 4.0e-12 78.6 161 36.0
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.9e-12 77.4 98 45.9
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.7e-10 72.0 52 63.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.4e-09 70.1 104 41.3
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.8e-09 69.7 105 42.9
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.8e-09 69.7 67 53.7
Pp3c13_11540 Physcomitrium patens HOM05D004041 ORTHO05D004564 2.9e-07 62.4 52 65.4
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 5.6e-06 58.2 72 45.8


User provided reference genes

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