Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 2.3e-210 735.3 376 100.0
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.3e-101 374.0 354 55.1
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 9.0e-98 361.3 359 53.5
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 9.3e-95 351.3 361 51.5
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.2e-94 350.9 355 51.8
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.0e-93 347.8 352 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.1e-92 344.4 364 50.8
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 3.3e-92 342.8 370 51.4
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 5.6e-92 342.0 359 50.7
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.3e-91 340.9 361 50.7
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 1.6e-91 340.5 358 48.9
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.1e-91 340.1 371 49.6
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 2.1e-91 340.1 362 50.8
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.7e-91 339.3 359 50.7
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 8.1e-91 338.2 361 48.8
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 8.1e-91 338.2 371 49.3
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.1e-90 337.8 371 48.5
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 1.1e-90 337.8 361 50.1
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 1.4e-90 337.4 355 49.3
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.8e-90 337.0 361 50.1
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 5.3e-90 335.5 361 49.6
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 7.6e-89 331.6 361 49.6
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 3.8e-88 329.3 361 47.9
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 6.5e-88 328.6 361 48.5
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 8.4e-88 328.2 360 47.8
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.1e-87 327.8 354 50.3
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.1e-87 327.8 352 48.9
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 2.5e-87 326.6 359 48.7
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 3.2e-87 326.2 362 50.3
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 7.1e-87 325.1 361 47.1
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 7.1e-87 325.1 357 47.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 7.1e-87 325.1 362 48.1
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 7.1e-87 325.1 361 47.6
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 9.3e-87 324.7 361 47.9
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 9.3e-87 324.7 361 47.9
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 1.2e-86 324.3 363 47.1
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.6e-86 323.9 362 46.7
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.6e-86 323.9 357 48.2
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.1e-86 323.6 362 49.2
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.7e-86 323.2 362 50.0
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 2.7e-86 323.2 388 45.4
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 3.5e-86 322.8 364 49.5
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 4.6e-86 322.4 352 48.3
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 4.6e-86 322.4 361 47.4
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 7.9e-86 321.6 361 46.8
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.3e-85 320.9 361 46.3
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.3e-85 320.9 374 46.0
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.8e-85 320.5 366 46.7
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 2.3e-85 320.1 363 47.1
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 2.3e-85 320.1 363 47.1
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 3.0e-85 319.7 363 47.1
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 3.0e-85 319.7 363 47.1
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 3.0e-85 319.7 362 47.2
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 3.9e-85 319.3 362 47.0
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 3.9e-85 319.3 362 47.0
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 5.1e-85 318.9 360 47.5
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 8.7e-85 318.2 359 47.6
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 8.7e-85 318.2 362 49.4
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 8.7e-85 318.2 361 47.9
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 8.7e-85 318.2 352 47.2
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.1e-84 317.8 362 47.0
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.5e-84 317.4 366 46.4
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 2.5e-84 316.6 361 46.5
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.3e-83 314.3 361 46.3
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 1.6e-83 313.9 384 45.1
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.1e-83 313.5 361 46.5
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.8e-83 312.4 368 46.7
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.8e-83 312.4 368 46.7
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 5.3e-82 308.9 363 46.3
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.0e-81 307.0 388 45.1
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 3.4e-81 306.2 361 47.6
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.0e-80 302.4 385 44.7
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 2.5e-79 300.1 361 45.4
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 4.2e-79 299.3 391 42.2
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 6.1e-78 295.4 434 40.6
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.0e-77 294.7 385 43.9
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.3e-77 294.3 361 47.1
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.1e-76 291.2 359 45.4
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 1.3e-75 287.7 361 42.9
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 4.8e-75 285.8 372 43.0
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 5.9e-73 278.9 359 44.0
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 2.1e-70 270.4 474 36.5
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.0e-69 268.1 293 49.5
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 6.7e-69 265.4 363 41.9
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 3.3e-68 263.1 361 41.0
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.3e-68 263.1 397 41.3
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 3.7e-67 259.6 272 51.5
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 3.1e-66 256.5 339 44.8
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 9.1e-66 255.0 478 34.9
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 4.5e-65 252.7 366 40.7
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.0e-64 251.5 283 46.6
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 2.2e-64 250.4 313 43.8
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 4.2e-63 246.1 284 47.2
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 3.7e-59 233.0 246 51.6
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 6.3e-59 232.3 261 47.5
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.4e-53 214.5 248 47.2
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 5.2e-53 212.6 236 50.0
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 7.7e-49 198.7 211 49.8
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 6.3e-43 179.1 186 50.0
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 4.7e-38 162.9 382 34.3
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 2.3e-29 134.0 157 50.3
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.8e-26 124.4 127 50.4
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.3e-24 117.5 147 47.6
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.9e-23 114.4 210 34.3
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 3.3e-23 113.6 109 51.4
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 2.8e-22 110.5 109 49.5
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 4.0e-21 106.7 217 35.9
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.9e-19 100.5 98 49.0
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 7.0e-18 95.9 93 44.1
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 4.6e-17 93.2 159 37.1
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 2.3e-16 90.9 84 51.2
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 3.9e-16 90.1 79 59.5
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.9e-15 87.8 254 28.7
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 3.6e-14 83.6 86 50.0
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.4e-12 77.0 50 72.0
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 2.4e-10 70.9 86 39.5


User provided reference genes

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