Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 7.9e-124 447.2 240 100.0
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 7.2e-16 88.6 82 54.9
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.4e-14 84.3 80 51.2
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 5.3e-11 72.4 97 43.3
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 2.2e-09 67.0 60 55.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.8e-09 66.2 97 42.3
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 5.0e-09 65.9 53 62.3
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 6.5e-09 65.5 97 41.2
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 6.5e-09 65.5 53 62.3
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 8.5e-09 65.1 54 59.3
Mapoly0053s0103 Marchantia polymorpha HOM05D021852 ORTHO05D002972 8.5e-09 65.1 142 31.7
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.4e-08 64.3 71 50.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 2.5e-08 63.5 54 57.4
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 2.5e-08 63.5 54 57.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 3.2e-08 63.2 73 52.1
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 3.2e-08 63.2 100 41.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 3.2e-08 63.2 50 64.0
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 3.2e-08 63.2 50 64.0
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 3.2e-08 63.2 71 50.7
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 4.2e-08 62.8 48 64.6
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.5e-08 62.4 97 40.2
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.5e-08 62.4 50 64.0
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 5.5e-08 62.4 54 57.4
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 7.2e-08 62.0 48 64.6
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 7.2e-08 62.0 50 62.0
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 7.2e-08 62.0 48 60.4
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 7.2e-08 62.0 48 60.4
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 7.2e-08 62.0 54 57.4
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 9.4e-08 61.6 48 62.5
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 9.4e-08 61.6 47 68.1
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 9.4e-08 61.6 69 49.3
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 9.4e-08 61.6 48 62.5
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.2e-07 61.2 53 56.6
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.2e-07 61.2 53 58.5
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.2e-07 61.2 71 49.3
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 1.2e-07 61.2 51 58.8
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.6e-07 60.8 62 51.6
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.6e-07 60.8 100 40.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.6e-07 60.8 47 61.7
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.6e-07 60.8 71 47.9
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 2.1e-07 60.5 71 47.9
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 2.1e-07 60.5 48 60.4
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 2.1e-07 60.5 53 54.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.1e-07 60.5 48 62.5
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 2.1e-07 60.5 97 40.2
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 2.7e-07 60.1 71 47.9
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 2.7e-07 60.1 48 62.5
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.7e-07 60.1 48 62.5
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 2.7e-07 60.1 48 62.5
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 2.7e-07 60.1 48 62.5
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 2.7e-07 60.1 67 53.7
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 2.7e-07 60.1 50 60.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.7e-07 60.1 51 56.9
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 3.6e-07 59.7 102 40.2
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.6e-07 59.7 102 40.2
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 4.7e-07 59.3 102 39.2
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 6.1e-07 58.9 101 37.6
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 6.1e-07 58.9 42 66.7
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 6.1e-07 58.9 42 66.7
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 6.1e-07 58.9 42 66.7
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 8.0e-07 58.5 58 50.0
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 8.0e-07 58.5 51 56.9
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 8.0e-07 58.5 48 60.4
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 8.0e-07 58.5 48 60.4
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 8.0e-07 58.5 71 47.9
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 8.0e-07 58.5 48 60.4
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 8.0e-07 58.5 78 44.9
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.0e-06 58.2 48 58.3
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.0e-06 58.2 48 60.4
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.0e-06 58.2 51 56.9
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.0e-06 58.2 51 56.9
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.0e-06 58.2 51 56.9
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.0e-06 58.2 102 39.2
Gorai.010G142600 Gossypium raimondii HOM05D002763 ORTHO05D002972 1.0e-06 58.2 55 50.9
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.0e-06 58.2 42 66.7
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.0e-06 58.2 42 66.7
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.0e-06 58.2 71 46.5
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.0e-06 58.2 71 47.9
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.0e-06 58.2 71 47.9
AagrBONN_evm.TU.Sc2ySwM_344.874 Anthoceros agrestis HOM05D021852 ORTHO05D031192 1.4e-06 57.8 124 32.3
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.4e-06 57.8 72 50.0
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.4e-06 57.8 72 50.0
Gohir.D06G122400 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.8e-06 57.4 55 50.9
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.8e-06 57.4 52 53.8
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.8e-06 57.4 48 58.3
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.3e-06 57.0 72 50.0
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.0e-06 56.6 102 39.2
SalBow3G4096 Salvia bowleyana HOM05D002763 ORTHO05D002972 3.0e-06 56.6 140 31.4
Duzib160G0230 Durio zibethinus HOM05D002763 ORTHO05D002972 5.2e-06 55.8 61 44.3
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 6.7e-06 55.5 42 61.9
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 6.7e-06 55.5 42 61.9
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 6.7e-06 55.5 42 61.9
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 8.8e-06 55.1 75 45.3
Duzib235G0511 Durio zibethinus HOM05D002763 ORTHO05D002972 8.8e-06 55.1 51 51.0
Thecc.06G058900 Theobroma cacao HOM05D002763 ORTHO05D002972 8.8e-06 55.1 56 46.4
vmacro20817 Vaccinium macrocarpon HOM05D002763 ORTHO05D002972 8.8e-06 55.1 57 42.1


User provided reference genes

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