Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 0.0e+00 2297.7 1195 100.0
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 2.5e-311 1072.4 1210 49.8
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 4.6e-305 1051.6 1216 48.9
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 4.8e-294 1015.0 1148 49.5
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 6.5e-275 951.4 1199 45.6
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 6.3e-262 908.3 1197 44.0
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.4e-256 890.6 1202 43.5
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 3.0e-256 889.4 1197 43.4
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 6.7e-256 888.3 1189 44.0
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 3.8e-251 872.5 1198 42.7
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 2.5e-250 869.8 1196 43.0
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 9.4e-250 867.8 1198 43.2
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 1.6e-249 867.1 1201 42.8
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 3.0e-248 862.8 1195 42.5
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 1.7e-246 857.1 1199 42.7
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.8e-246 855.5 1197 41.9
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 6.3e-246 855.1 1203 42.2
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 2.4e-245 853.2 1208 42.1
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 4.1e-245 852.4 1191 42.1
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 5.3e-245 852.0 1200 41.7
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 7.0e-245 851.7 1209 41.7
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 9.1e-245 851.3 1206 41.9
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 1.2e-244 850.9 1204 41.9
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 1.6e-244 850.5 1202 42.0
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 7.7e-244 848.2 1206 41.3
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 1.7e-243 847.0 1204 41.7
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 2.9e-243 846.3 1204 41.5
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 5.0e-243 845.5 1209 41.7
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 1.1e-242 844.3 1203 41.6
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 3.2e-242 842.8 1200 41.4
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 4.2e-242 842.4 1198 42.0
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 9.4e-242 841.3 1207 41.0
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 1.2e-241 840.9 1202 41.3
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 2.1e-241 840.1 1251 40.6
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 8.0e-241 838.2 1198 41.3
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 4.0e-240 835.9 1207 40.6
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 6.7e-240 835.1 1205 41.8
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 1.2e-239 834.3 1202 41.2
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 1.2e-239 834.3 1210 41.3
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 1.2e-239 834.3 1249 41.5
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 1.5e-239 833.9 1201 40.6
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.5e-239 833.9 1235 40.6
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.5e-239 833.9 1235 40.6
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 7.5e-239 831.6 1138 42.6
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 9.7e-239 831.2 1217 40.3
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 9.7e-239 831.2 1202 40.9
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.8e-238 829.7 1199 40.1
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 4.8e-238 828.9 1204 40.9
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 6.3e-238 828.6 1193 41.8
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 6.3e-238 828.6 1201 40.7
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 8.2e-238 828.2 1202 41.3
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 1.4e-237 827.4 1200 40.5
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 1.8e-237 827.0 1191 41.5
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 4.1e-237 825.9 1200 40.5
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 1.6e-236 823.9 1199 40.9
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 2.0e-236 823.5 1180 41.0
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 2.7e-236 823.2 1200 40.8
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 2.7e-236 823.2 1200 40.2
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 1.3e-235 820.8 1213 40.1
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 5.0e-235 818.9 1197 41.0
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 6.5e-235 818.5 1184 41.8
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 6.5e-235 818.5 1203 40.3
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 1.1e-234 817.8 1203 40.6
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 5.5e-234 815.5 1142 41.5
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 2.1e-233 813.5 1208 41.3
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 2.7e-233 813.1 1200 40.4
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 4.0e-232 809.3 1202 41.0
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 8.3e-230 801.6 1200 40.8
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 6.5e-227 792.0 1203 39.8
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 3.2e-226 789.6 1153 41.1
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 7.2e-226 788.5 1093 42.2
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 3.6e-225 786.2 1205 41.1
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 2.3e-224 783.5 1201 39.4
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 2.3e-224 783.5 1206 39.6
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 5.2e-224 782.3 1201 39.7
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 6.8e-224 781.9 1120 41.2
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 6.3e-222 775.4 1250 38.9
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 1.5e-218 764.2 1204 39.5
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 1.5e-218 764.2 1129 41.0
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 1.6e-217 760.8 1202 39.2
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 1.6e-217 760.8 1305 36.9
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 2.3e-216 756.9 1156 39.6
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 1.4e-213 747.7 1203 38.7
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 1.9e-210 737.3 1209 38.5
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 3.3e-210 736.5 1203 38.2
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 4.0e-208 729.6 1039 41.7
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 7.8e-204 715.3 1202 37.4
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 6.6e-187 659.1 939 40.8
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 1.1e-170 605.1 829 43.2
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.1e-168 598.6 1181 35.1
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 2.4e-165 587.4 797 42.9
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 1.0e-163 582.0 891 39.5
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 1.0e-163 582.0 862 41.1
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 6.7e-155 552.7 861 41.7
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 6.7e-155 552.7 861 41.7
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 7.7e-151 539.3 655 45.3
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 1.7e-150 538.1 741 42.8
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 4.7e-140 503.4 1250 31.1
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.7e-134 485.0 864 36.7
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 8.5e-118 429.5 492 47.6
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 4.1e-112 410.6 735 37.7
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 6.6e-110 403.3 473 46.3
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.0e-107 396.0 455 47.9
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 1.3e-102 379.0 452 46.0
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 1.9e-101 375.2 1465 27.1
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.6e-92 345.5 492 42.1
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 6.4e-89 333.6 521 39.9
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 7.8e-87 326.6 345 48.7
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 2.5e-85 321.6 484 37.6
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.4e-75 289.3 541 34.2
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 7.6e-74 283.5 411 40.1
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 1.2e-71 276.2 1241 27.2
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 2.4e-64 251.9 279 49.5
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 4.6e-63 247.7 339 42.8
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.3e-62 246.1 498 34.9
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 3.0e-62 245.0 291 48.5
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 4.0e-59 234.6 265 50.2
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 7.1e-56 223.8 269 47.6
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 2.7e-55 221.9 332 41.0
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.8e-51 209.1 574 28.6
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 1.0e-49 203.4 323 36.2
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.8e-46 192.6 256 41.4
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 5.1e-46 191.0 241 45.6
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 6.9e-43 180.6 328 37.2
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 1.3e-38 166.4 452 30.3
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 5.3e-35 154.5 203 39.9
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 7.2e-32 144.1 191 41.4
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.7e-31 142.1 149 45.0
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 7.9e-31 140.6 236 36.9
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.5e-29 135.6 395 31.6
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 7.4e-29 134.0 208 40.4
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 4.8e-28 131.3 211 39.3
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 6.3e-28 131.0 212 38.2
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 2.3e-22 112.5 190 36.8
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 5.7e-21 107.8 234 35.5
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 1.7e-20 106.3 144 41.7
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.1e-19 103.6 291 29.2
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 1.8e-19 102.8 165 37.6
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 5.5e-16 91.3 203 32.0
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 6.7e-14 84.3 103 41.7
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 9.7e-13 80.5 399 27.1
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-12 79.0 146 34.9
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-12 79.0 146 34.9
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 2.8e-12 79.0 79 43.0
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 4.8e-12 78.2 77 54.5
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.8e-11 76.3 371 25.9
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 4.1e-11 75.1 93 44.1
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.2e-10 73.6 80 47.5
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 2.0e-10 72.8 78 48.7
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 2.0e-10 72.8 82 39.0
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 1.0e-09 70.5 186 29.0
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 7.2e-08 64.3 57 54.4
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 7.2e-08 64.3 129 34.1
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 9.4e-08 63.9 101 37.6
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 1.2e-07 63.5 63 47.6
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 4.0e-06 58.5 54 51.9


User provided reference genes

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