Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 0.0e+00 1326.6 773 100.0
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 3.4e-107 393.7 312 62.5
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 9.5e-102 375.6 311 60.1
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 4.4e-99 366.7 289 63.0
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 1.1e-94 352.1 318 57.2
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 2.1e-77 294.7 309 46.9
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 5.2e-76 290.0 316 50.6
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 2.0e-75 288.1 316 49.7
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 1.3e-74 285.4 309 48.9
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 6.4e-74 283.1 313 49.8
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 1.1e-73 282.3 319 48.3
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 2.4e-73 281.2 323 46.7
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 2.4e-73 281.2 308 48.7
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 3.2e-73 280.8 311 48.2
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 4.1e-73 280.4 247 55.9
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 4.1e-73 280.4 355 45.1
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 4.1e-73 280.4 312 48.7
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 5.4e-73 280.0 309 47.6
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 7.1e-73 279.6 308 48.1
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 7.1e-73 279.6 317 47.6
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 7.1e-73 279.6 308 49.0
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 7.1e-73 279.6 313 48.2
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.2e-72 278.9 314 47.5
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 1.6e-72 278.5 248 56.0
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 2.1e-72 278.1 322 46.3
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 2.7e-72 277.7 314 49.0
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 3.5e-72 277.3 312 47.4
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 3.5e-72 277.3 308 47.4
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 4.6e-72 276.9 357 45.9
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 4.6e-72 276.9 350 46.3
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 6.0e-72 276.6 330 47.0
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 7.8e-72 276.2 243 56.8
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 7.8e-72 276.2 312 48.7
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 1.0e-71 275.8 350 46.3
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 1.0e-71 275.8 243 55.6
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.0e-71 275.8 243 56.0
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 1.0e-71 275.8 312 48.1
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 1.0e-71 275.8 310 48.7
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 1.7e-71 275.0 311 47.6
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 1.7e-71 275.0 320 48.1
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 1.7e-71 275.0 308 48.4
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 2.3e-71 274.6 349 46.1
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 2.3e-71 274.6 243 56.0
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 2.3e-71 274.6 328 46.6
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 3.0e-71 274.2 320 48.1
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 3.9e-71 273.9 325 47.4
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 5.1e-71 273.5 349 46.1
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 5.1e-71 273.5 349 46.1
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 5.1e-71 273.5 349 46.1
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 5.1e-71 273.5 308 45.8
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 5.1e-71 273.5 316 47.2
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 1.1e-70 272.3 353 46.2
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 1.1e-70 272.3 331 46.5
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 1.1e-70 272.3 312 49.4
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 1.5e-70 271.9 243 55.6
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 1.9e-70 271.6 309 48.9
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 3.3e-70 270.8 247 54.3
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 4.3e-70 270.4 308 48.7
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 5.6e-70 270.0 294 50.7
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 9.6e-70 269.2 319 46.1
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 9.6e-70 269.2 310 48.1
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 9.6e-70 269.2 247 53.4
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 2.8e-69 267.7 311 47.9
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 3.6e-69 267.3 317 45.7
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 4.7e-69 266.9 316 46.5
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 1.4e-68 265.4 309 45.3
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 1.8e-68 265.0 321 46.7
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 2.4e-68 264.6 320 45.6
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.4e-68 264.6 332 45.8
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 1.2e-67 262.3 322 43.8
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 2.6e-67 261.2 290 49.3
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 3.4e-67 260.8 295 49.8
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.7e-66 258.5 285 48.1
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 1.7e-66 258.5 307 46.9
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 2.2e-66 258.1 310 47.1
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.2e-66 258.1 356 42.7
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 2.9e-66 257.7 227 55.5
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 2.9e-66 257.7 274 49.3
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 2.9e-66 257.7 312 45.5
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 3.8e-66 257.3 292 49.0
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 4.9e-66 256.9 312 45.2
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 8.4e-66 256.1 369 41.2
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.9e-65 255.0 243 54.7
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 2.7e-64 251.1 312 44.2
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 3.0e-63 247.7 297 45.5
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-62 245.4 318 41.8
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 9.0e-60 236.1 310 42.3
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 1.2e-59 235.7 310 41.6
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 5.8e-59 233.4 212 54.2
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 1.9e-57 228.4 319 41.1
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 2.8e-53 214.5 197 54.8
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 2.8e-53 214.5 198 55.6
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 1.2e-51 209.1 315 41.9
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 1.5e-51 208.8 251 47.8
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 1.5e-51 208.8 251 47.8
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 2.7e-48 198.0 373 37.0
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 4.8e-45 187.2 293 37.9
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 8.1e-45 186.4 419 34.4
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 6.9e-44 183.3 175 56.0
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 8.4e-42 176.4 243 43.6
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 8.4e-42 176.4 321 36.8
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 3.7e-37 161.0 218 42.7
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 3.7e-37 161.0 159 52.8
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 8.2e-37 159.8 243 37.4
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 1.4e-36 159.1 142 52.8
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 6.9e-36 156.8 211 44.5
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 2.0e-35 155.2 257 40.5
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 1.4e-33 149.1 293 33.1
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 1.9e-33 148.7 206 43.2
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 3.5e-32 144.4 144 53.5
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 1.3e-31 142.5 257 38.9
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 1.8e-31 142.1 258 32.2
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 1.9e-30 138.7 192 45.3
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 3.1e-28 131.3 100 58.0
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 1.2e-27 129.4 244 35.7
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 3.6e-24 117.9 230 33.0
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 3.9e-23 114.4 170 42.9
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 1.3e-21 109.4 105 49.5
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 8.2e-21 106.7 169 40.2
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 1.1e-17 96.3 205 34.1
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.0e-15 89.7 181 34.3
SEGI_11203 Sequoiadendron giganteum HOM05D006976 ORTHO05D008761 6.7e-15 87.0 111 36.9
Sed0001172 Sechium edule HOM05D006976 ORTHO05D008761 1.7e-13 82.4 229 28.8
CAN.G129.10 Capsicum annuum HOM05D006976 ORTHO05D008761 2.8e-13 81.6 229 27.9
RcHm_v2.0_CPg0502081 Rosa chinensis HOM05D006976 ORTHO05D008761 3.7e-13 81.3 229 28.8
DCAR_032496 Daucus carota HOM05D006976 ORTHO05D008761 1.1e-12 79.7 232 30.6
Phvul.002G278108 Phaseolus vulgaris HOM05D006976 ORTHO05D008761 1.1e-12 79.7 225 28.9
Potri.016G094100 Populus trichocarpa HOM05D006976 ORTHO05D008761 1.8e-12 79.0 90 38.9
Eucgr.I02539 Eucalyptus grandis HOM05D006976 ORTHO05D008761 2.4e-12 78.6 98 36.7
FvH4_3g27991 Fragaria vesca HOM05D006976 ORTHO05D008761 3.1e-12 78.2 105 37.1
Eucgr.E01114 Eucalyptus grandis HOM05D006976 ORTHO05D008761 5.3e-12 77.4 224 26.8
Migut.D01165 Erythranthe guttata HOM05D006976 ORTHO05D008761 7.0e-12 77.0 102 37.3
Potri.013G162300 Populus trichocarpa HOM05D006976 ORTHO05D008761 9.1e-12 76.6 186 29.0
Oeu012774.1 Olea europaea HOM05D006976 ORTHO05D008761 1.2e-11 76.3 164 28.7
Prupe.7G029500 Prunus persica HOM05D006976 ORTHO05D008761 1.2e-11 76.3 104 37.5
Lj5A796T24 Lonicera japonica HOM05D005782 ORTHO05D007436 1.5e-11 75.9 49 67.3
SalBow1G3572 Salvia bowleyana HOM05D006976 ORTHO05D008761 1.5e-11 75.9 230 29.1
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 2.0e-11 75.5 122 43.4
PGR111G0047 Punica granatum HOM05D006976 ORTHO05D008761 2.6e-11 75.1 221 25.3
AL2G20664 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 3.5e-11 74.7 185 26.5
C02p43530 Brassica napus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 183 26.8
BolSC29t60590H Brassica oleracea HOM05D006976 ORTHO05D008761 3.5e-11 74.7 90 36.7
BolSC47t61096H Brassica oleracea HOM05D006976 ORTHO05D008761 3.5e-11 74.7 185 26.5
Eucgr.E02607 Eucalyptus grandis HOM05D006976 ORTHO05D008761 3.5e-11 74.7 173 27.7
Thhalv10010976m.g Eutrema salsugineum HOM05D006976 ORTHO05D008761 3.5e-11 74.7 224 25.0
Glyma.07G028150 Glycine max HOM05D006976 ORTHO05D008761 3.5e-11 74.7 105 37.1
HanXRQChr01g0020351 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr10g0283561 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr10g0284251 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr10g0289271 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr10g0318191 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr11g0326831 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr15g0497531 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQChr16g0528991 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
HanXRQCPg0580041 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-11 74.7 230 27.0
Nn2g14969 Nelumbo nucifera HOM05D006976 ORTHO05D008761 3.5e-11 74.7 224 27.7
PSO548G0011 Papaver somniferum HOM05D006976 ORTHO05D008761 3.5e-11 74.7 228 27.2
EL10Ac4g09265 Beta vulgaris HOM05D006976 ORTHO05D008761 4.5e-11 74.3 90 37.8
BraA06t25422Z Brassica rapa HOM05D006976 ORTHO05D008761 7.7e-11 73.6 224 25.4
arahy.Tifrunner.gnm1.ann1.Z0BJS7 Arachis hypogaea HOM05D000806 ORTHO05D002324 1.0e-10 73.2 230 28.3
ATCG00530 Arabidopsis thaliana HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 26.3
BcaC03g16543 Brassica carinata HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 25.0
A06p23180 Brassica napus HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 25.0
C09p40240 Brassica napus HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 25.0
BolSC35t60749H Brassica oleracea HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 25.0
BolSC46t61034H Brassica oleracea HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 25.0
BraSC25t45865Z Brassica rapa HOM05D006976 ORTHO05D008761 1.7e-10 72.4 224 25.0
Lj2P1239T139 Lonicera japonica HOM05D006976 ORTHO05D008761 1.7e-10 72.4 96 34.4
CARHR282110 Cardamine hirsuta HOM05D006976 ORTHO05D008761 2.2e-10 72.0 224 25.0
BolC9t56930H Brassica oleracea HOM05D006976 ORTHO05D008761 3.8e-10 71.2 224 25.0
Lalb_Chr23g0274511 Lupinus albus HOM05D006976 ORTHO05D008761 3.8e-10 71.2 90 36.7
HanXRQChr17g0548241 Helianthus annuus HOM05D006976 ORTHO05D008761 6.5e-10 70.5 221 27.1
Gohir.A09G041060 Gossypium hirsutum HOM05D006976 ORTHO05D008761 8.5e-10 70.1 173 29.5
QL93p0999_0001 Quercus lobata HOM05D006976 ORTHO05D008761 8.5e-10 70.1 102 35.3
EL10As15g24128 Beta vulgaris HOM05D000806 ORTHO05D002324 1.9e-09 68.9 100 33.0
Hund28750 Selenicereus undatus HOM05D006976 ORTHO05D008761 1.2e-08 66.2 225 25.3
CAN.G232.11 Capsicum annuum HOM05D006976 ORTHO05D008761 2.1e-08 65.5 230 25.2
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 4.7e-08 64.3 161 37.3
Dinv26495 Davidia involucrata HOM05D000001 ORTHO05D010280 8.0e-08 63.5 122 35.2
Hund29806 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.0e-07 63.2 220 26.8
GSVIVG01029875001 Vitis vinifera HOM05D006976 ORTHO05D008761 1.0e-07 63.2 226 27.0
Hund07993 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.8e-07 62.4 224 26.3
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 3.0e-07 61.6 120 33.3
Gorai.002G160100 Gossypium raimondii HOM05D006976 ORTHO05D008761 3.0e-07 61.6 75 36.0
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 6.7e-07 60.5 120 38.3
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 1.5e-06 59.3 111 32.4


User provided reference genes

Program Settings