Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8345 Chara braunii HOM05D004796 ORTHO05D034338 5.3e-229 797.3 407 100.0
MCO10G007 Micromonas commoda HOM05D004796 ORTHO05D034338 8.6e-78 295.0 388 45.4
Cre07.g322000 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D034338 9.8e-74 281.6 433 40.9
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 2.7e-71 273.5 388 41.2
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 7.3e-69 265.4 388 41.0
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 5.2e-67 259.2 388 42.5
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 6.8e-67 258.8 388 42.8
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 6.8e-67 258.8 388 40.7
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 8.9e-67 258.5 388 40.5
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 1.5e-66 257.7 388 39.9
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 2.6e-66 256.9 388 40.7
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 7.5e-66 255.4 388 39.4
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 9.8e-66 255.0 388 40.2
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 9.8e-66 255.0 388 40.2
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 1.3e-65 254.6 388 40.2
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 1.7e-65 254.2 388 39.7
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 1.7e-65 254.2 388 39.4
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 2.2e-65 253.8 388 39.9
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 3.7e-65 253.1 388 39.7
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 4.9e-65 252.7 388 40.5
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 4.9e-65 252.7 388 39.9
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 4.9e-65 252.7 388 39.7
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 4.9e-65 252.7 388 38.9
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 8.3e-65 251.9 388 38.7
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 8.3e-65 251.9 388 39.7
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 8.3e-65 251.9 388 39.9
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 1.1e-64 251.5 388 39.2
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.4e-64 251.1 388 38.7
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 1.4e-64 251.1 388 38.7
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 1.4e-64 251.1 388 40.5
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 1.9e-64 250.8 388 39.4
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 1.9e-64 250.8 388 38.9
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 1.9e-64 250.8 388 39.9
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 1.9e-64 250.8 388 38.7
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 2.4e-64 250.4 388 39.7
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 2.4e-64 250.4 388 39.2
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 2.4e-64 250.4 388 40.2
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 2.4e-64 250.4 388 38.1
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 4.1e-64 249.6 388 38.7
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 4.1e-64 249.6 388 39.4
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 5.4e-64 249.2 385 39.7
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 5.4e-64 249.2 388 38.9
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 7.0e-64 248.8 388 39.7
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 7.0e-64 248.8 388 39.2
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 7.0e-64 248.8 388 38.7
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 9.2e-64 248.4 391 38.6
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 9.2e-64 248.4 388 38.7
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 9.2e-64 248.4 388 37.4
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 9.2e-64 248.4 388 38.1
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 9.2e-64 248.4 388 38.1
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 9.2e-64 248.4 388 38.7
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 1.2e-63 248.1 388 38.4
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 1.2e-63 248.1 388 38.1
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 1.6e-63 247.7 388 38.1
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 1.6e-63 247.7 388 39.7
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 2.0e-63 247.3 388 39.4
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 2.0e-63 247.3 388 39.4
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 2.7e-63 246.9 388 37.6
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 2.7e-63 246.9 388 38.4
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 2.7e-63 246.9 388 38.7
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 2.7e-63 246.9 388 37.9
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 2.7e-63 246.9 388 37.9
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 3.5e-63 246.5 388 37.9
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 3.5e-63 246.5 388 39.2
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 3.5e-63 246.5 388 39.2
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 3.5e-63 246.5 388 38.7
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 3.5e-63 246.5 388 38.9
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 3.5e-63 246.5 388 37.1
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 4.6e-63 246.1 388 38.4
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 4.6e-63 246.1 388 39.2
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 6.0e-63 245.7 388 38.7
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 6.0e-63 245.7 388 37.4
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 7.8e-63 245.4 388 39.2
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.0e-62 245.0 388 37.6
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 1.0e-62 245.0 388 39.4
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 1.0e-62 245.0 388 37.1
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 1.0e-62 245.0 388 39.4
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 1.3e-62 244.6 388 38.7
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.3e-62 243.8 388 38.7
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 2.3e-62 243.8 388 37.6
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 2.3e-62 243.8 388 38.7
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 2.3e-62 243.8 388 37.6
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 2.3e-62 243.8 388 39.9
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 3.0e-62 243.4 388 38.4
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 3.9e-62 243.0 388 38.4
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 3.9e-62 243.0 388 38.4
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 3.9e-62 243.0 389 38.6
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 5.0e-62 242.7 388 37.4
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 6.6e-62 242.3 388 37.9
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 6.6e-62 242.3 388 37.9
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 6.6e-62 242.3 388 38.4
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 8.6e-62 241.9 388 38.1
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 1.1e-61 241.5 388 38.7
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 1.5e-61 241.1 388 38.7
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 2.5e-61 240.4 388 38.1
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 4.3e-61 239.6 388 38.7
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 4.3e-61 239.6 388 38.4
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 7.3e-61 238.8 388 38.7
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 9.5e-61 238.4 388 38.4
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 1.2e-60 238.0 388 36.3
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 1.6e-60 237.7 388 38.1
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.6e-60 237.7 388 37.6
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.1e-60 237.3 388 37.4
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 2.1e-60 237.3 388 38.1
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 3.6e-60 236.5 388 37.6
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 4.7e-60 236.1 388 38.4
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.1e-59 235.0 389 38.6
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 4.0e-59 233.0 388 37.6
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 5.2e-59 232.6 388 37.9
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 5.2e-59 232.6 388 37.9
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 6.8e-59 232.3 388 37.9
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 6.8e-59 232.3 388 37.9
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 1.2e-58 231.5 388 37.4
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 2.6e-58 230.3 388 37.9
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 2.6e-58 230.3 388 37.6
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 7.5e-58 228.8 378 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 2.9e-57 226.9 388 36.9
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 2.9e-57 226.9 388 37.6
MBI11_g19461_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 1.6e-52 211.1 286 40.2
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 1.3e-49 201.4 388 34.8
THA.LOC104817643 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 4.9e-49 199.5 254 42.9
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 5.4e-48 196.1 386 32.6
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 5.6e-45 186.0 388 33.5
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 4.7e-44 183.0 370 35.9
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 8.9e-43 178.7 388 33.2
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 1.4e-40 171.4 284 37.7
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 4.2e-40 169.9 388 32.5
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 1.1e-37 161.8 385 30.4
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 4.2e-24 116.7 386 25.6
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 9.3e-24 115.5 386 25.4
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 9.3e-24 115.5 386 25.4
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 1.2e-23 115.2 388 27.3
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 2.1e-23 114.4 204 34.8
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 1.3e-20 105.1 378 27.2
RcHm_v2.0_Chr5g0045361 Rosa chinensis HOM05D004796 ORTHO05D006527 8.1e-20 102.4 135 40.0
Haze_26851 Corylus avellana HOM05D005551 ORTHO05D007207 9.0e-19 99.0 371 25.3
Pp3c24_10350 Physcomitrium patens HOM05D005551 ORTHO05D007207 1.2e-15 88.6 366 27.0
HPP92_018084 Vanilla planifolia HOM05D005551 ORTHO05D007207 1.2e-15 88.6 417 26.1
SEGI_36821 Sequoiadendron giganteum HOM05D005551 ORTHO05D007207 2.7e-15 87.4 364 27.5
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 3.5e-15 87.0 184 34.2
Pp3c23_8390 Physcomitrium patens HOM05D005551 ORTHO05D007207 3.5e-15 87.0 366 27.3
HanXRQChr14g0433441 Helianthus annuus HOM05D005551 ORTHO05D007207 4.6e-15 86.7 365 26.8
MCO11G678 Micromonas commoda HOM05D005551 ORTHO05D007207 4.6e-15 86.7 376 25.5
Hund27398 Selenicereus undatus HOM05D005551 ORTHO05D007207 4.6e-15 86.7 406 26.4
RcHm_v2.0_Chr2g0109351 Rosa chinensis HOM05D004796 ORTHO05D006527 6.0e-15 86.3 84 48.8
AUR62006577 Chenopodium quinoa HOM05D005551 ORTHO05D007207 1.3e-14 85.1 381 26.2
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 1.8e-14 84.7 169 33.7
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 2.3e-14 84.3 253 27.7
Lsat_1_v5_gn_1_112501 Lactuca sativa HOM05D005551 ORTHO05D007207 2.3e-14 84.3 365 26.3
Nn2g10251 Nelumbo nucifera HOM05D005551 ORTHO05D007207 3.0e-14 84.0 366 26.0
AagrBONN_evm.TU.Sc2ySwM_117.1158 Anthoceros agrestis HOM05D005551 ORTHO05D007207 5.1e-14 83.2 285 27.4
HanXRQChr05g0144321 Helianthus annuus HOM05D005551 ORTHO05D007207 8.7e-14 82.4 272 27.6
EL10Ac4g10072 Beta vulgaris HOM05D005551 ORTHO05D007207 1.1e-13 82.0 365 25.8
AUR62000231 Chenopodium quinoa HOM05D005551 ORTHO05D007207 1.6e-12 78.2 197 30.5
Sc06g0004770 Simmondsia chinensis HOM05D005551 ORTHO05D007207 2.1e-12 77.8 365 24.9
SMO347G0159 Selaginella moellendorffii HOM05D005551 ORTHO05D007207 3.7e-12 77.0 371 24.8
Zm00001eb195480 Zea mays HOM05D005551 ORTHO05D007207 3.7e-12 77.0 378 25.1
Cc02_g08840 Coffea canephora HOM05D005551 ORTHO05D007207 1.1e-11 75.5 386 25.6
Sabra09G0049100 Salix brachista HOM05D005551 ORTHO05D007207 1.1e-11 75.5 236 28.8
Potri.009G066000 Populus trichocarpa HOM05D005551 ORTHO05D007207 1.8e-11 74.7 367 25.3
HanXRQChr14g0447641 Helianthus annuus HOM05D004796 ORTHO05D006527 5.3e-11 73.2 94 41.5
CBR_g4414 Chara braunii HOM05D005551 ORTHO05D007207 2.6e-10 70.9 236 26.3
CBR_g45931 Chara braunii HOM05D005551 ORTHO05D007207 2.6e-10 70.9 236 26.3
Os12g0287300 Oryza sativa ssp. japonica HOM05D005551 ORTHO05D007207 1.1e-08 65.5 348 25.0
MCO11G073 Micromonas commoda HOM05D005551 ORTHO05D007207 2.5e-08 64.3 170 30.0
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 3.9e-06 57.0 144 28.5


User provided reference genes

Program Settings