Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 8.9e-120 433.7 236 100.0
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 7.3e-106 387.5 223 88.8
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.6e-66 256.1 226 58.4
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.3e-65 253.8 226 57.5
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.7e-65 253.4 226 58.0
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 8.2e-65 251.1 224 57.1
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.1e-64 250.8 226 57.1
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.8e-64 250.0 226 58.0
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 4.1e-64 248.8 226 56.2
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 2.0e-63 246.5 224 57.6
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 2.6e-63 246.1 226 55.8
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 3.5e-63 245.7 226 57.1
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 3.5e-63 245.7 226 55.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 3.5e-63 245.7 225 55.6
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.5e-63 245.4 226 55.8
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 5.9e-63 245.0 223 55.6
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.3e-62 243.8 226 56.2
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.3e-62 243.8 226 54.9
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.7e-62 243.4 226 55.8
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.7e-62 243.4 226 55.8
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.9e-62 242.7 219 56.6
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 3.8e-62 242.3 226 55.3
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.8e-62 242.3 226 54.4
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 5.0e-62 241.9 227 54.2
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 6.5e-62 241.5 226 55.8
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 6.5e-62 241.5 226 54.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 6.5e-62 241.5 219 55.7
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.1e-61 240.7 221 55.7
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.1e-61 240.7 219 55.7
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.5e-61 239.6 221 55.2
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.5e-61 239.6 226 54.4
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.5e-61 239.6 226 54.4
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.5e-61 239.6 226 54.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.2e-61 239.2 218 56.4
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 5.5e-61 238.4 226 54.0
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 9.4e-61 237.7 226 53.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-60 236.9 226 54.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.1e-60 236.5 224 54.5
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.1e-60 236.5 226 53.5
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.1e-60 236.5 223 54.7
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.7e-60 236.1 226 54.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.7e-60 236.1 226 53.5
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.6e-60 235.7 226 54.4
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 3.6e-60 235.7 226 55.3
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.6e-60 235.7 223 55.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 3.6e-60 235.7 226 54.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.7e-60 235.3 226 54.0
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.7e-60 235.3 226 54.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.7e-60 235.3 224 53.1
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 8.0e-60 234.6 225 54.7
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 8.0e-60 234.6 226 53.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 8.0e-60 234.6 226 51.3
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 8.0e-60 234.6 219 53.9
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.8e-59 233.4 226 53.1
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.0e-59 232.3 225 53.8
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 4.0e-59 232.3 224 53.6
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 4.0e-59 232.3 226 53.1
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 5.2e-59 231.9 225 53.3
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.2e-59 231.9 226 52.2
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 6.7e-59 231.5 225 54.2
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 6.7e-59 231.5 227 54.2
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 8.8e-59 231.1 226 53.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 8.8e-59 231.1 226 51.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 3.3e-58 229.2 250 49.2
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 3.3e-58 229.2 226 50.9
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 4.4e-58 228.8 226 50.9
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 4.4e-58 228.8 226 50.9
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 5.7e-58 228.4 226 50.4
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 5.7e-58 228.4 226 54.4
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 9.7e-58 227.6 205 57.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.7e-57 226.9 226 50.4
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.2e-57 226.5 225 52.0
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.2e-57 226.5 226 51.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 4.8e-57 225.3 225 51.1
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 6.3e-57 224.9 226 51.3
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.1e-56 224.2 219 51.6
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.4e-56 223.8 226 50.4
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.4e-56 223.8 223 50.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.8e-56 223.4 226 50.4
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 2.4e-56 223.0 195 57.9
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 4.1e-56 222.2 217 51.6
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 7.0e-56 221.5 226 50.4
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 7.0e-56 221.5 226 50.4
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.5e-55 219.2 272 45.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.0e-54 217.6 226 50.0
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.3e-54 217.2 223 52.9
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 5.0e-54 215.3 195 56.4
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 6.5e-54 214.9 262 46.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 6.5e-54 214.9 200 56.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 8.5e-54 214.5 253 49.0
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.9e-53 213.4 219 49.8
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.9e-53 213.4 200 55.5
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.5e-53 213.0 195 56.4
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.2e-53 212.6 195 56.9
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 5.5e-53 211.8 224 48.2
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.5e-53 211.8 195 56.9
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 7.2e-53 211.5 195 56.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 9.4e-53 211.1 195 55.4
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.2e-52 210.7 226 51.8
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-52 210.3 224 47.8
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.6e-52 210.3 224 47.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 2.1e-52 209.9 227 50.2
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 2.7e-52 209.5 224 47.3
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 8.0e-52 208.0 210 54.8
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.4e-51 207.2 226 50.0
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.4e-51 207.2 226 50.0
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.8e-51 206.8 224 47.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 4.0e-51 205.7 225 47.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 4.4e-50 202.2 192 53.1
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.3e-49 200.7 190 56.3
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.3e-49 200.7 177 56.5
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.1e-48 194.5 212 51.4
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.7e-47 193.0 219 49.8
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.0e-46 188.7 196 51.5
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.5e-45 187.2 179 54.2
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.0e-43 181.0 223 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 9.8e-42 174.5 165 53.3
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.1e-40 171.0 161 55.9
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 3.1e-40 169.5 160 55.0
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-39 166.8 214 46.7
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 5.0e-38 162.2 160 55.0
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.3e-35 153.3 224 41.5
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.2e-33 146.7 195 46.7
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.9e-33 146.4 145 54.5
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 3.9e-30 136.0 141 49.6
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 5.6e-29 132.1 201 38.8
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 8.0e-28 128.3 203 37.9
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 5.8e-26 122.1 124 52.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.9e-25 119.0 129 49.6
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 8.3e-25 118.2 226 35.0
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.1e-24 115.9 129 49.6
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 3.5e-23 112.8 146 42.5
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 3.9e-22 109.4 106 51.9
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 5.0e-22 109.0 101 55.4
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.6e-21 105.5 94 57.4
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.8e-20 103.2 76 59.2
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 4.7e-20 102.4 94 58.5
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 6.2e-20 102.1 226 31.9
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.8e-19 100.5 201 35.3
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-18 97.8 94 52.1
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 9.8e-18 94.7 257 30.7
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.7e-17 94.0 216 31.5
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.7e-17 94.0 216 31.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 3.7e-17 92.8 94 56.4
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.1e-15 87.0 100 50.0
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.6e-15 85.9 74 54.1
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 8.9e-11 71.6 64 51.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.9e-09 66.6 51 72.5
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 3.7e-09 66.2 72 47.2
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 9.2e-08 61.6 51 49.0
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 3.5e-07 59.7 48 50.0


User provided reference genes

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