Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g7951 Chara braunii HOM05D006476 ORTHO05D008178 3.9e-240 834.3 406 100.0
SMO364G0439 Selaginella moellendorffii HOM05D006476 ORTHO05D008178 8.6e-38 162.2 305 34.4
Lsat_1_v5_gn_9_37301 Lactuca sativa HOM05D006476 ORTHO05D008178 8.1e-36 155.6 335 30.7
HanXRQChr10g0287121 Helianthus annuus HOM05D006476 ORTHO05D008178 1.1e-35 155.2 341 29.3
ATR0789G002 Amborella trichopoda HOM05D006476 ORTHO05D008178 1.8e-35 154.5 314 31.8
ECA247G0212 Erigeron canadensis HOM05D006476 ORTHO05D008178 3.1e-35 153.7 313 31.9
Nn2g10977 Nelumbo nucifera HOM05D006476 ORTHO05D008178 4.0e-35 153.3 314 32.2
PGR031G1226 Punica granatum HOM05D006476 ORTHO05D008178 6.8e-35 152.5 314 31.5
Sc07g0006480 Simmondsia chinensis HOM05D006476 ORTHO05D008178 6.8e-35 152.5 314 32.2
Aa31LG1G23210 Aethionema arabicum HOM05D006476 ORTHO05D008178 1.2e-34 151.8 325 31.4
Cpa.g.sc162.36 Carica papaya HOM05D006476 ORTHO05D008178 1.5e-34 151.4 315 31.4
Solyc09g013100.3 Solanum lycopersicum HOM05D006476 ORTHO05D008178 1.5e-34 151.4 310 31.9
Sopen09g006940 Solanum pennellii HOM05D006476 ORTHO05D008178 1.5e-34 151.4 310 31.9
Glyma.01G124200 Glycine max HOM05D006476 ORTHO05D008178 2.0e-34 151.0 317 31.2
TAR633G1736 Trochodendron aralioides HOM05D006476 ORTHO05D008178 2.0e-34 151.0 314 31.5
CDE04G2527 Ceratophyllum demersum HOM05D006476 ORTHO05D008178 3.4e-34 150.2 315 31.1
Dinv10268 Davidia involucrata HOM05D006476 ORTHO05D008178 3.4e-34 150.2 323 32.5
CiPaw.10G160000 Carya illinoinensis HOM05D006476 ORTHO05D008178 4.4e-34 149.8 314 31.2
Lalb_Chr12g0207111 Lupinus albus HOM05D006476 ORTHO05D008178 4.4e-34 149.8 315 32.1
TWI53G1048 Tripterygium wilfordii HOM05D006476 ORTHO05D008178 5.8e-34 149.4 289 31.1
unitig_26.g9345 Utricularia gibba HOM05D006476 ORTHO05D008178 5.8e-34 149.4 319 32.9
Atru.chr8.2316 Acer truncatum HOM05D006476 ORTHO05D008178 7.6e-34 149.1 319 30.4
Ah.12g058950 Amaranthus hybridus HOM05D006476 ORTHO05D008178 7.6e-34 149.1 314 30.3
CAN.G1194.2 Capsicum annuum HOM05D006476 ORTHO05D008178 7.6e-34 149.1 336 32.7
HPP92_001920 Vanilla planifolia HOM05D006476 ORTHO05D008178 7.6e-34 149.1 322 31.7
CSS0013060 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 9.9e-34 148.7 314 31.2
CSS0023949 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 9.9e-34 148.7 314 31.2
EL10Ac5g12509 Beta vulgaris HOM05D006476 ORTHO05D008178 1.3e-33 148.3 314 29.6
CARHR211940 Cardamine hirsuta HOM05D006476 ORTHO05D008178 1.3e-33 148.3 348 29.3
COL.COLO4_14474 Corchorus olitorius HOM05D006476 ORTHO05D008178 1.3e-33 148.3 314 31.5
Sp6g40850 Schrenkiella parvula HOM05D006476 ORTHO05D008178 1.3e-33 148.3 346 29.2
Thhalv10013251m.g Eutrema salsugineum HOM05D006476 ORTHO05D008178 1.7e-33 147.9 348 29.3
Nitab4.5_0004676g0040 Nicotiana tabacum HOM05D006476 ORTHO05D008178 1.7e-33 147.9 314 31.2
Hma1.2p1_0479F.1_g161560 Hydrangea macrophylla HOM05D006476 ORTHO05D008178 2.2e-33 147.5 314 31.2
Mapoly0062s0099 Marchantia polymorpha HOM05D006476 ORTHO05D008178 2.9e-33 147.1 323 33.4
Aqoxy1G01315 Aquilegia oxysepala HOM05D006476 ORTHO05D008178 3.8e-33 146.7 307 32.2
DCAR_018674 Daucus carota HOM05D006476 ORTHO05D008178 3.8e-33 146.7 273 33.3
Duzib093G1646 Durio zibethinus HOM05D006476 ORTHO05D008178 4.9e-33 146.4 314 30.9
PSO765G0213 Papaver somniferum HOM05D006476 ORTHO05D008178 4.9e-33 146.4 325 31.1
PSO349G0327 Papaver somniferum HOM05D006476 ORTHO05D008178 6.4e-33 146.0 325 31.1
AL6G10460 Arabidopsis lyrata HOM05D006476 ORTHO05D008178 8.4e-33 145.6 337 29.7
Cfa017133 Carpinus fangiana HOM05D006476 ORTHO05D008178 1.1e-32 145.2 314 31.5
BcaB01g06105 Brassica carinata HOM05D006476 ORTHO05D008178 1.4e-32 144.8 324 29.6
A03p00230 Brassica napus HOM05D006476 ORTHO05D008178 1.4e-32 144.8 324 29.6
C03p00370 Brassica napus HOM05D006476 ORTHO05D008178 1.4e-32 144.8 324 29.6
BolC3t12605H Brassica oleracea HOM05D006476 ORTHO05D008178 1.4e-32 144.8 324 29.6
BraA03t09413Z Brassica rapa HOM05D006476 ORTHO05D008178 1.4e-32 144.8 324 29.6
AUR62030513 Chenopodium quinoa HOM05D006476 ORTHO05D008178 1.4e-32 144.8 292 31.5
CsaV3_3G033460 Cucumis sativus L. HOM05D006476 ORTHO05D008178 1.4e-32 144.8 322 31.1
Gohir.D01G219100 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.4e-32 144.8 314 31.2
MD12G1177900 Malus domestica HOM05D006476 ORTHO05D008178 1.4e-32 144.8 314 30.3
Thecc.05G008700 Theobroma cacao HOM05D006476 ORTHO05D008178 1.4e-32 144.8 314 30.6
VMungo0331G1781 Vigna mungo HOM05D006476 ORTHO05D008178 1.4e-32 144.8 333 31.2
AT5G01590 Arabidopsis thaliana HOM05D006476 ORTHO05D008178 1.9e-32 144.4 321 31.5
arahy.Tifrunner.gnm1.ann1.39JBYW Arachis hypogaea HOM05D006476 ORTHO05D008178 1.9e-32 144.4 314 29.3
Carub.0006s0024 Capsella rubella HOM05D006476 ORTHO05D008178 1.9e-32 144.4 337 29.4
Haze_21064 Corylus avellana HOM05D006476 ORTHO05D008178 1.9e-32 144.4 314 31.5
BcaB01g06237 Brassica carinata HOM05D006476 ORTHO05D008178 2.4e-32 144.1 324 29.6
Migut.L02041 Erythranthe guttata HOM05D006476 ORTHO05D008178 2.4e-32 144.1 336 31.0
Gohir.D04G134700 Gossypium hirsutum HOM05D006476 ORTHO05D008178 2.4e-32 144.1 310 31.3
Gorai.002G265900 Gossypium raimondii HOM05D006476 ORTHO05D008178 2.4e-32 144.1 314 31.2
Phvul.010G065700 Phaseolus vulgaris HOM05D006476 ORTHO05D008178 2.4e-32 144.1 332 30.4
TPR.G5241 Trifolium pratense HOM05D006476 ORTHO05D008178 2.4e-32 144.1 316 30.7
CAN.G168.26 Capsicum annuum HOM05D006476 ORTHO05D008178 3.2e-32 143.7 322 31.1
Gohir.A01G229200 Gossypium hirsutum HOM05D006476 ORTHO05D008178 4.2e-32 143.3 314 31.2
Gohir.A04G095014 Gossypium hirsutum HOM05D006476 ORTHO05D008178 4.2e-32 143.3 310 31.3
arahy.Tifrunner.gnm1.ann1.86RN6H Arachis hypogaea HOM05D006476 ORTHO05D008178 5.4e-32 142.9 314 29.0
ClCG10G022410 Citrullus lanatus HOM05D006476 ORTHO05D008178 5.4e-32 142.9 332 31.3
Ciclev10011480m.g Citrus clementina HOM05D006476 ORTHO05D008178 5.4e-32 142.9 310 30.0
Gorai.012G118300 Gossypium raimondii HOM05D006476 ORTHO05D008178 5.4e-32 142.9 310 31.0
Prupe.6G283400 Prunus persica HOM05D006476 ORTHO05D008178 5.4e-32 142.9 322 29.5
Cc06_g00920 Coffea canephora HOM05D006476 ORTHO05D008178 7.1e-32 142.5 345 30.4
Manes.09G110300 Manihot esculenta HOM05D006476 ORTHO05D008178 7.1e-32 142.5 296 30.1
Nitab4.5_0000230g0070 Nicotiana tabacum HOM05D006476 ORTHO05D008178 7.1e-32 142.5 285 31.2
RcHm_v2.0_Chr3g0461841 Rosa chinensis HOM05D006476 ORTHO05D008178 7.1e-32 142.5 314 30.6
Sed0000477 Sechium edule HOM05D006476 ORTHO05D008178 9.2e-32 142.1 306 31.0
Psat7g247200 Pisum sativum HOM05D006476 ORTHO05D008178 1.2e-31 141.7 314 28.7
PGSC0003DMG400029192 Solanum tuberosum HOM05D006476 ORTHO05D008178 1.6e-31 141.4 235 40.4
THA.LOC104816184 Tarenaya hassleriana HOM05D006476 ORTHO05D008178 1.6e-31 141.4 319 31.3
Dinv12144 Davidia involucrata HOM05D006476 ORTHO05D008178 2.1e-31 141.0 201 39.8
Medtr4g014600 Medicago truncatula HOM05D006476 ORTHO05D008178 2.7e-31 140.6 320 28.8
Hund10946 Selenicereus undatus HOM05D006476 ORTHO05D008178 2.7e-31 140.6 314 29.9
AagrBONN_evm.TU.Sc2ySwM_344.2114 Anthoceros agrestis HOM05D006476 ORTHO05D008178 3.5e-31 140.2 326 30.4
FvH4_6g10790 Fragaria vesca HOM05D006476 ORTHO05D008178 3.5e-31 140.2 314 30.3
Lj3A863T42 Lonicera japonica HOM05D006476 ORTHO05D008178 3.5e-31 140.2 322 29.5
QL07p034180 Quercus lobata HOM05D006476 ORTHO05D008178 3.5e-31 140.2 310 31.6
Eucgr.A00607 Eucalyptus grandis HOM05D006476 ORTHO05D008178 4.6e-31 139.8 310 29.0
FAN05G3786 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.6e-31 139.8 314 30.3
FAN05G4924 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.6e-31 139.8 314 30.3
FAN09G2591 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.6e-31 139.8 314 30.3
FAN09G3668 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.6e-31 139.8 314 30.3
GSVIVG01030297001 Vitis vinifera HOM05D006476 ORTHO05D008178 7.8e-31 139.0 348 29.6
CANSAT35G1014 Cannabis sativa HOM05D006476 ORTHO05D008178 1.0e-30 138.7 322 29.8
MSTRG.10202 Avicennia marina HOM05D006476 ORTHO05D008178 1.7e-30 137.9 314 30.3
Lj3g0015173 Lotus japonicus HOM05D006476 ORTHO05D008178 1.7e-30 137.9 314 28.7
Oeu038728.1 Olea europaea HOM05D006476 ORTHO05D008178 1.7e-30 137.9 311 31.5
Peaxi162Scf01132g00347 Petunia axillaris HOM05D006476 ORTHO05D008178 1.7e-30 137.9 308 31.5
Potri.016G123900 Populus trichocarpa HOM05D006476 ORTHO05D008178 1.7e-30 137.9 290 31.0
Glyma.03G050400 Glycine max HOM05D006476 ORTHO05D008178 5.1e-30 136.3 196 38.3
MELO3C009137.2 Cucumis melo HOM05D006476 ORTHO05D008178 6.6e-30 136.0 322 30.4
Solyc09g015470.4 Solanum lycopersicum HOM05D006476 ORTHO05D008178 7.3e-29 132.5 194 39.2
Pp3c1_41280 Physcomitrium patens HOM05D006476 ORTHO05D008178 9.6e-29 132.1 357 27.5
Ca_20338_v3 Cicer arietinum L. HOM05D006476 ORTHO05D008178 3.6e-28 130.2 306 30.4
FAN14G4129 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.8e-28 129.8 326 29.1
Actinidia29077 Actinidia chinensis HOM05D006476 ORTHO05D008178 1.8e-27 127.9 310 27.7
Sabra16G0118700 Salix brachista HOM05D006476 ORTHO05D008178 1.2e-26 125.2 138 42.8
SEGI_26269 Sequoiadendron giganteum HOM05D006476 ORTHO05D008178 1.3e-25 121.7 322 29.5
SGA_v2.0_scaffold110G31194 Striga asiatica HOM05D006476 ORTHO05D008178 8.7e-22 109.0 327 26.0
arahy.Tifrunner.gnm1.ann1.36T17X Arachis hypogaea HOM05D006476 ORTHO05D008178 1.8e-19 101.3 227 30.4
MD04G1164400 Malus domestica HOM05D006476 ORTHO05D008178 1.9e-16 91.3 93 44.1
Cre17.g727100 Chlamydomonas reinhardtii HOM05D006476 ORTHO05D008178 3.5e-07 60.5 116 30.2
MCO15G063 Micromonas commoda HOM05D006476 ORTHO05D008178 5.1e-06 56.6 94 30.9


User provided reference genes

Program Settings