Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 6.6e-203 710.7 410 100.0
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.0e-62 243.4 239 52.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.1e-62 242.7 270 49.3
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 1.5e-61 241.1 270 48.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 2.8e-60 236.9 234 52.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 2.8e-60 236.9 235 52.3
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 3.6e-60 236.5 240 50.8
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 3.1e-59 233.4 226 52.2
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.0e-59 233.0 232 50.9
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.3e-59 232.6 234 50.9
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 6.9e-59 232.3 229 51.5
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 6.9e-59 232.3 213 54.0
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 9.0e-59 231.9 232 52.6
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 9.0e-59 231.9 225 51.6
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 9.0e-59 231.9 219 53.0
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 9.0e-59 231.9 226 51.8
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.2e-58 231.5 232 51.3
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.2e-58 231.5 229 51.5
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.5e-58 231.1 241 49.4
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.5e-58 231.1 231 51.9
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.5e-58 231.1 231 51.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.5e-58 231.1 225 53.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.5e-58 231.1 234 52.6
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.0e-58 230.7 221 52.5
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 2.0e-58 230.7 221 52.5
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.0e-58 230.7 225 52.0
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.0e-58 230.7 262 46.6
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.0e-58 230.7 234 50.9
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.0e-58 230.7 225 52.4
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.6e-58 230.3 228 50.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.6e-58 230.3 223 52.5
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.6e-58 230.3 235 51.5
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.4e-58 229.9 232 51.3
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 3.4e-58 229.9 221 52.9
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 4.4e-58 229.6 225 51.6
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 4.4e-58 229.6 228 51.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 4.4e-58 229.6 235 50.6
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 4.4e-58 229.6 234 51.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.4e-58 229.6 234 51.7
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.4e-58 229.6 221 52.5
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 4.4e-58 229.6 235 51.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 5.8e-58 229.2 230 52.6
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.8e-58 229.2 228 50.4
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 5.8e-58 229.2 226 52.7
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.6e-58 228.8 220 52.3
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.6e-58 228.8 238 50.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.6e-58 228.8 238 51.3
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.6e-58 228.8 238 51.3
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.6e-58 228.8 228 52.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 9.9e-58 228.4 226 52.2
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 9.9e-58 228.4 226 51.3
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 9.9e-58 228.4 233 51.1
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.3e-57 228.0 231 51.1
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.3e-57 228.0 228 52.2
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.7e-57 227.6 236 49.6
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.7e-57 227.6 225 51.1
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.2e-57 227.3 240 49.2
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 2.2e-57 227.3 240 49.2
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.2e-57 227.3 240 49.2
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.2e-57 227.3 230 51.3
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.2e-57 227.3 225 51.1
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 2.9e-57 226.9 240 48.8
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.9e-57 226.9 231 51.1
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.9e-57 226.9 233 51.5
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.9e-57 226.9 230 50.0
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.8e-57 226.5 226 53.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 3.8e-57 226.5 236 50.0
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 3.8e-57 226.5 236 50.0
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 3.8e-57 226.5 237 50.2
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.8e-57 226.5 229 49.8
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 3.8e-57 226.5 226 51.3
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.8e-57 226.5 225 52.0
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.9e-57 226.1 226 51.3
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 4.9e-57 226.1 227 50.2
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 4.9e-57 226.1 226 52.2
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 4.9e-57 226.1 226 52.2
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.4e-57 225.7 230 52.2
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 6.4e-57 225.7 222 51.8
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 6.4e-57 225.7 231 49.4
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 8.4e-57 225.3 221 51.6
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 8.4e-57 225.3 219 52.5
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 8.4e-57 225.3 236 49.2
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 8.4e-57 225.3 226 51.8
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.1e-56 224.9 230 51.3
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.1e-56 224.9 229 50.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.4e-56 224.6 219 52.5
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.9e-56 224.2 221 53.8
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 1.9e-56 224.2 226 51.8
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.4e-56 223.8 286 44.8
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 2.4e-56 223.8 230 50.0
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.2e-56 223.4 221 50.7
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.2e-56 223.0 226 50.4
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 4.2e-56 223.0 226 50.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 4.2e-56 223.0 225 49.8
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.1e-56 222.2 218 50.5
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.1e-56 222.2 218 50.5
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 7.1e-56 222.2 224 51.8
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 9.3e-56 221.9 221 50.2
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 9.3e-56 221.9 219 51.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 9.3e-56 221.9 238 50.0
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-55 221.5 227 49.8
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.1e-55 220.7 219 51.1
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.7e-55 220.3 218 51.4
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.5e-55 219.9 224 52.2
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.5e-55 219.9 225 49.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 4.6e-55 219.5 226 51.3
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 6.0e-55 219.2 234 48.7
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 7.9e-55 218.8 223 50.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 7.9e-55 218.8 226 50.9
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 7.9e-55 218.8 225 48.4
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.0e-54 218.4 241 48.1
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.7e-54 217.6 228 50.0
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.3e-54 217.2 253 47.8
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 3.0e-54 216.9 241 47.7
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.0e-54 216.9 228 50.0
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 6.6e-54 215.7 262 44.7
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 6.6e-54 215.7 219 50.7
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.1e-53 214.9 230 50.4
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 9.6e-53 211.8 224 48.7
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.1e-52 210.7 258 46.5
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.8e-52 210.3 223 50.7
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.1e-51 208.4 249 45.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.9e-49 200.3 269 42.8
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 3.8e-49 199.9 259 44.8
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-48 198.4 218 50.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 2.1e-47 194.1 243 45.7
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 3.5e-47 193.4 278 41.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 6.0e-47 192.6 278 41.0
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.0e-46 191.8 225 45.3
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.8e-46 191.0 285 40.7
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.9e-46 189.9 238 46.6
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.1e-46 189.5 225 46.2
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 3.3e-45 186.8 194 50.0
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.6e-44 184.5 192 49.0
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 3.1e-43 180.3 226 46.0
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.2e-42 178.3 214 45.8
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.9e-40 171.0 227 43.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.5e-40 170.6 184 47.3
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.0e-38 165.2 236 42.4
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 8.7e-38 162.2 228 39.0
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.1e-37 161.8 176 46.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 7.4e-37 159.1 213 40.8
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 8.2e-36 155.6 174 45.4
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.1e-35 155.2 118 58.5
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 3.8e-33 146.7 114 56.1
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 8.4e-33 145.6 111 58.6
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 9.3e-32 142.1 113 58.4
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.1e-29 135.2 96 61.5
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.8e-28 129.8 229 33.6
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 2.0e-13 81.3 90 47.8
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.5e-09 65.9 59 57.6
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.9e-08 64.7 50 64.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 4.2e-08 63.5 40 70.0
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 7.2e-08 62.8 59 52.5
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 8.8e-06 55.8 44 59.1


User provided reference genes

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