Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 0.0e+00 1667.5 1187 100.0
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.0e-86 323.9 494 40.3
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-85 322.8 629 35.8
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.0e-83 316.2 491 40.3
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 3.0e-83 314.7 487 40.0
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 8.9e-83 313.2 494 40.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 3.4e-82 311.2 516 39.7
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.4e-82 311.2 516 39.7
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 2.8e-81 308.1 513 39.6
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 4.1e-80 304.3 488 40.4
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 5.4e-80 303.9 494 39.9
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 5.4e-80 303.9 516 39.0
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.0e-80 303.5 516 39.1
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 9.2e-80 303.1 516 39.1
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.7e-79 301.6 519 38.2
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 5.9e-79 300.4 519 39.3
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 7.8e-79 300.1 513 38.6
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.8e-79 300.1 516 39.0
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.3e-78 299.3 516 37.0
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.7e-78 298.9 495 38.8
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 2.3e-78 298.5 494 38.9
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 5.0e-78 297.4 488 38.7
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 6.6e-78 297.0 488 38.9
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 8.6e-78 296.6 493 38.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.5e-77 295.8 489 39.5
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.5e-77 295.8 499 41.3
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 2.5e-77 295.0 494 38.5
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 3.3e-77 294.7 513 38.0
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.3e-77 294.7 496 38.7
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 4.3e-77 294.3 490 39.6
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 5.6e-77 293.9 513 37.8
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.3e-77 293.5 490 39.2
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 7.3e-77 293.5 494 38.9
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 9.5e-77 293.1 488 39.5
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.5e-77 293.1 516 37.8
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.2e-76 292.7 494 38.3
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.6e-76 292.4 531 36.7
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.6e-76 292.4 500 38.2
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.6e-76 292.4 488 38.7
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 2.1e-76 292.0 491 38.1
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 2.1e-76 292.0 491 38.1
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.1e-76 292.0 494 38.5
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.1e-76 292.0 491 38.3
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.1e-76 292.0 492 38.4
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 2.8e-76 291.6 489 39.3
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.8e-76 291.6 528 36.0
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.8e-76 291.6 515 38.6
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 3.6e-76 291.2 488 38.5
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 6.1e-76 290.4 488 38.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 6.1e-76 290.4 495 38.2
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 6.1e-76 290.4 543 36.6
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 6.1e-76 290.4 495 38.2
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 8.0e-76 290.0 493 38.7
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 8.0e-76 290.0 494 38.5
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.0e-75 289.7 480 40.0
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.0e-75 289.7 516 37.4
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.0e-75 289.7 489 38.2
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.4e-75 289.3 494 38.3
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 2.3e-75 288.5 495 37.8
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 4.0e-75 287.7 491 37.5
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 5.2e-75 287.3 494 38.1
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 6.8e-75 287.0 488 39.1
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.2e-74 286.2 494 39.1
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.2e-74 286.2 491 37.9
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.5e-74 285.8 518 37.6
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.5e-74 285.8 488 37.5
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 3.4e-74 284.6 488 38.1
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 3.4e-74 284.6 495 39.2
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 4.4e-74 284.3 499 38.5
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.4e-74 284.3 495 37.6
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 7.5e-74 283.5 494 38.7
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.5e-74 283.5 494 38.1
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 9.8e-74 283.1 493 38.9
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-73 282.3 488 37.5
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.2e-73 282.0 494 38.7
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.2e-73 282.0 494 38.9
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.2e-73 282.0 491 37.3
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.2e-73 282.0 496 38.1
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 2.9e-73 281.6 494 38.7
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.7e-73 281.2 519 35.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.1e-72 279.6 519 37.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.9e-72 278.9 516 36.6
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.2e-72 278.1 494 37.9
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 4.1e-72 277.7 521 36.3
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 7.0e-72 276.9 511 37.4
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.7e-71 275.0 499 37.3
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.7e-71 275.0 494 37.7
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 3.9e-70 271.2 494 37.7
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.1e-69 269.6 494 36.6
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.1e-69 269.6 489 38.7
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.1e-68 265.4 525 34.9
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 3.6e-68 264.6 487 35.1
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.8e-67 262.3 475 36.8
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.0e-66 258.8 491 35.2
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 9.5e-61 240.0 287 47.0
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.2e-60 239.6 465 37.0
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.1e-59 235.0 452 35.0
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 5.1e-54 217.6 468 34.4
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.1e-51 209.9 492 33.5
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 6.8e-51 207.2 253 46.2
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.5e-50 206.1 429 36.4
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 6.4e-49 200.7 478 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.4e-43 182.2 247 43.3
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 3.4e-42 178.3 409 33.5
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 8.4e-41 173.7 285 40.4
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 4.6e-39 167.9 463 30.5
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.3e-36 159.8 488 27.5
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.2e-36 157.5 168 51.2
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.5e-34 152.9 341 33.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.4e-34 151.8 277 39.0
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 8.1e-28 130.6 350 32.6
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.0e-23 114.4 323 29.4
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.3e-22 112.5 121 50.4
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-21 109.4 322 28.9
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 4.8e-20 104.8 258 31.0
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.6e-18 99.0 108 49.1
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 6.5e-17 94.4 273 30.0
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 9.7e-13 80.5 97 43.3
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 3.1e-11 75.5 101 44.6
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 2.2e-09 69.3 104 33.7
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.8e-09 68.6 258 27.5
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 5.0e-09 68.2 96 38.5
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-08 66.2 117 34.2
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.5e-08 65.9 110 33.6
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.2e-08 65.1 99 34.3
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 7.2e-08 64.3 43 65.1
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.6e-07 63.2 100 45.0


User provided reference genes

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