Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.2e-253 879.4 464 100.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.3e-122 444.1 405 57.8
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.2e-61 240.7 322 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.2e-61 240.7 327 42.5
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-60 237.7 327 42.2
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-59 233.8 320 40.9
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-58 231.1 320 39.4
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.9e-58 229.9 327 38.5
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-57 228.4 319 40.1
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-57 228.0 320 41.2
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-57 226.5 321 39.3
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.6e-56 223.4 307 41.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 6.2e-56 222.6 380 36.6
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 5.2e-55 219.5 309 39.8
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.8e-55 219.2 315 40.3
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 8.9e-55 218.8 353 36.0
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-54 217.6 380 36.1
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.0e-54 217.6 325 38.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.0e-54 217.6 351 36.5
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 4.4e-54 216.5 374 36.1
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 4.4e-54 216.5 338 36.4
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.4e-54 216.5 335 37.6
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.4e-54 216.5 335 37.6
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.4e-54 216.5 380 35.8
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 5.8e-54 216.1 340 36.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.5e-54 215.7 312 38.5
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.5e-54 215.7 331 37.2
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 7.5e-54 215.7 316 39.9
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 7.5e-54 215.7 338 37.0
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 7.5e-54 215.7 335 38.2
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 7.5e-54 215.7 328 37.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 9.8e-54 215.3 375 35.7
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-53 214.9 372 36.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-53 214.9 338 36.4
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-53 214.9 316 39.9
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.3e-53 214.9 354 35.9
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.3e-53 214.9 335 37.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.3e-53 214.9 338 37.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.7e-53 214.5 344 36.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.7e-53 214.5 309 38.2
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.2e-53 214.2 329 36.8
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.9e-53 213.8 316 39.9
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.9e-53 213.8 316 39.9
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.9e-53 213.8 308 37.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.9e-53 213.8 339 35.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.9e-53 213.8 311 38.3
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 3.7e-53 213.4 359 37.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 3.7e-53 213.4 356 36.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 6.4e-53 212.6 313 38.3
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 8.3e-53 212.2 344 36.6
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 8.3e-53 212.2 344 37.2
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.3e-53 212.2 325 38.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 8.3e-53 212.2 332 36.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.1e-52 211.8 367 35.1
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.1e-52 211.8 381 34.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.1e-52 211.8 365 32.9
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.1e-52 211.8 346 35.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.1e-52 211.8 338 36.1
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.4e-52 211.5 372 34.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-52 211.5 380 34.5
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.4e-52 211.5 316 38.6
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.4e-52 211.5 311 37.9
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.4e-52 211.5 355 35.5
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.9e-52 211.1 307 38.1
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.4e-52 210.7 297 39.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-52 210.7 345 35.9
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.2e-52 210.3 363 36.1
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 3.2e-52 210.3 365 35.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.2e-52 210.3 342 36.3
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.2e-52 210.3 367 35.1
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.2e-52 210.3 310 38.4
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 3.2e-52 210.3 317 37.9
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.1e-52 209.9 352 36.1
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.1e-52 209.9 304 37.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-52 209.5 338 36.1
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 5.4e-52 209.5 316 39.2
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.4e-52 209.5 356 35.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 5.4e-52 209.5 333 34.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 7.0e-52 209.1 371 36.1
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 7.0e-52 209.1 375 35.2
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 7.0e-52 209.1 381 32.3
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.2e-51 208.4 330 36.4
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.6e-51 208.0 316 37.7
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.6e-51 208.0 309 37.2
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.6e-51 208.0 386 33.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-51 208.0 386 33.9
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.0e-51 207.6 310 36.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.0e-51 207.6 339 36.6
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.0e-51 207.6 386 33.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.7e-51 207.2 309 37.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.7e-51 207.2 310 37.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.5e-51 206.8 332 36.7
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.5e-51 206.8 323 38.1
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 3.5e-51 206.8 329 35.6
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 4.6e-51 206.5 340 35.0
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.6e-51 206.5 313 36.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.6e-51 206.5 322 37.6
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 6.0e-51 206.1 310 37.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.0e-50 205.3 310 37.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.0e-50 205.3 380 32.6
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.0e-50 205.3 315 37.5
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.3e-50 204.1 329 34.7
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 6.6e-50 202.6 374 35.0
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 6.6e-50 202.6 356 33.4
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 8.6e-50 202.2 374 35.3
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 8.6e-50 202.2 322 37.0
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 8.6e-50 202.2 366 33.1
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 8.6e-50 202.2 327 35.8
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.1e-49 201.8 318 36.5
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-49 201.8 285 38.2
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.9e-49 201.1 317 36.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.5e-49 200.7 320 35.9
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.5e-49 200.7 335 37.3
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.5e-49 200.7 331 32.9
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.3e-49 200.3 317 36.6
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 5.6e-49 199.5 390 34.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 7.3e-49 199.1 357 34.2
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 7.3e-49 199.1 290 39.7
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 7.3e-49 199.1 312 37.8
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 7.3e-49 199.1 312 37.8
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 7.3e-49 199.1 312 37.5
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-48 198.4 308 37.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.1e-48 197.6 329 33.7
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.1e-48 197.6 288 38.5
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.1e-48 197.6 375 34.9
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.6e-48 196.8 362 32.0
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 4.7e-48 196.4 312 37.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.2e-46 191.8 329 35.0
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.2e-46 191.8 317 33.8
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.4e-46 189.9 312 35.3
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.4e-45 186.0 296 36.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.4e-44 184.9 281 35.6
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.1e-44 182.6 321 37.7
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 6.0e-43 179.5 316 35.8
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.6e-40 170.2 278 37.1
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-39 168.3 323 33.1
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-38 165.2 323 33.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-37 161.4 333 30.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.1e-36 156.0 323 32.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.6e-35 153.3 349 31.5
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.6e-30 136.0 302 32.8
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.5e-27 127.1 317 28.4
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.8e-27 125.9 137 42.3
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.9e-25 121.3 193 38.3
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 9.6e-25 119.0 346 26.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-24 118.6 316 32.6
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.6e-24 117.1 152 38.2
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.2e-24 116.3 317 29.0
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-23 114.4 186 36.6
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.0e-23 113.6 226 34.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-23 113.6 103 49.5
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-23 113.2 310 27.4
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 6.9e-23 112.8 226 33.2
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.2e-22 112.1 220 32.7
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-22 112.1 360 30.8
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-22 111.7 300 29.3
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.4e-22 110.5 209 35.4
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.4e-22 110.5 227 31.7
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.4e-22 110.5 279 29.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.9e-21 107.5 270 28.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.4e-20 104.4 128 44.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 7.1e-20 102.8 381 27.3
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.1e-19 101.3 122 41.8
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-18 97.8 164 36.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.1e-16 91.3 123 43.1
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.4e-15 88.6 349 24.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.0e-15 87.0 315 28.3
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-14 85.5 67 53.7
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.2e-13 81.3 125 34.4
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.8e-13 80.5 193 29.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-12 78.6 104 42.3
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 2.4e-12 77.8 350 24.9
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.6e-09 65.9 121 34.7
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.6e-06 57.8 75 38.7


User provided reference genes

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