Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 2.5e-36 155.2 97 100.0
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 8.2e-19 97.1 61 80.3
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.8e-18 95.9 59 83.1
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 2.4e-18 95.5 58 82.8
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.4e-18 95.5 58 82.8
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 5.3e-18 94.4 58 81.0
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 4.9e-16 87.8 50 88.0
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 2.5e-15 85.5 52 80.8
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 2.5e-15 85.5 68 69.1
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 4.2e-15 84.7 52 82.7
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 1.6e-14 82.8 47 87.2
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.1e-14 82.4 46 89.1
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 2.1e-14 82.4 46 89.1
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 2.1e-14 82.4 48 83.3
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 2.1e-14 82.4 46 89.1
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 4.6e-14 81.3 46 87.0
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 6.0e-14 80.9 47 83.0
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 6.0e-14 80.9 47 83.0
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 6.0e-14 80.9 47 83.0
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 6.0e-14 80.9 45 88.9
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 6.0e-14 80.9 47 83.0
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.0e-13 80.1 44 88.6
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 1.0e-13 80.1 46 84.8
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 1.0e-13 80.1 47 83.0
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 1.3e-13 79.7 59 71.2
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 1.3e-13 79.7 45 86.7
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.8e-13 79.3 44 88.6
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 2.3e-13 79.0 66 63.6
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 3.0e-13 78.6 45 84.4
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 3.0e-13 78.6 45 84.4
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 3.0e-13 78.6 45 84.4
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 3.9e-13 78.2 44 86.4
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 3.9e-13 78.2 44 86.4
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 5.1e-13 77.8 45 84.4
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 8.7e-13 77.0 45 84.4
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 1.1e-12 76.6 40 97.5
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.5e-12 76.3 43 86.0
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.5e-12 76.3 43 86.0
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 4.3e-12 74.7 44 84.1
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 5.7e-12 74.3 41 85.4
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 1.3e-11 73.2 42 83.3
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 1.3e-11 73.2 45 84.4
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 2.2e-11 72.4 41 85.4
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 2.2e-11 72.4 41 85.4
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.8e-11 72.0 40 87.5
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 2.8e-11 72.0 40 87.5
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 6.3e-11 70.9 40 85.0
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 6.3e-11 70.9 40 85.0
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 6.3e-11 70.9 40 85.0
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 6.3e-11 70.9 40 85.0
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 8.2e-11 70.5 39 87.2
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 8.2e-11 70.5 39 87.2
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 8.2e-11 70.5 39 87.2
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 1.8e-10 69.3 39 84.6
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.8e-10 69.3 39 84.6
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 1.8e-10 69.3 39 84.6
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 1.8e-10 69.3 39 84.6
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 1.8e-10 69.3 39 84.6
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.8e-10 69.3 39 84.6
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 3.1e-10 68.6 38 86.8
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 4.1e-10 68.2 38 86.8
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 5.3e-10 67.8 39 82.1
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 6.9e-10 67.4 38 84.2
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 9.0e-10 67.0 38 84.2
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 5.0e-08 61.2 61 54.1
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 2.5e-07 58.9 61 52.5
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 2.7e-06 55.5 51 56.9


User provided reference genes

Program Settings