Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 1.7e-197 692.6 374 100.0
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 7.5e-28 129.0 147 44.2
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.2e-27 127.5 146 44.5
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.8e-26 124.4 141 42.6
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.7e-24 117.9 146 42.5
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.5e-23 114.0 168 40.5
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 7.2e-23 112.5 142 40.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.4e-21 108.2 139 39.6
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 6.1e-14 82.8 143 32.2
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.8e-13 81.3 142 33.8
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 2.3e-13 80.9 144 33.3
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.0e-13 80.1 142 33.1
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 4.0e-13 80.1 146 32.9
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 5.2e-13 79.7 161 33.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 6.8e-13 79.3 138 33.3
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.5e-12 78.2 142 33.8
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.0e-12 77.8 139 32.4
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.0e-12 77.8 142 33.1
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.0e-12 77.8 142 33.1
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.6e-12 77.4 146 32.2
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.6e-12 77.4 141 33.3
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.4e-12 76.6 142 32.4
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.4e-12 76.6 142 32.4
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.4e-12 76.6 160 32.5
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 5.7e-12 76.3 142 31.7
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 5.7e-12 76.3 139 31.7
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.7e-12 76.3 142 33.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 7.5e-12 75.9 138 33.3
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 7.5e-12 75.9 142 33.8
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.3e-11 75.1 139 33.8
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-11 75.1 142 33.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.3e-11 75.1 142 33.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.3e-11 75.1 142 31.7
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.3e-11 75.1 142 31.7
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-11 74.7 141 33.3
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.7e-11 74.7 142 31.0
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.7e-11 74.7 142 31.0
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.2e-11 74.3 142 33.8
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.2e-11 74.3 165 31.5
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.8e-11 73.9 142 32.4
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.8e-11 73.9 142 32.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.8e-11 73.9 138 33.3
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.8e-11 73.9 143 34.3
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 3.7e-11 73.6 164 30.5
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 3.7e-11 73.6 137 32.8
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 3.7e-11 73.6 142 30.3
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 4.9e-11 73.2 180 30.0
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 4.9e-11 73.2 139 31.7
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 6.3e-11 72.8 142 33.8
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 6.3e-11 72.8 165 32.1
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.3e-11 72.8 143 32.9
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.3e-11 72.8 143 34.3
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 8.3e-11 72.4 138 34.1
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 8.3e-11 72.4 163 30.1
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 8.3e-11 72.4 163 31.9
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 8.3e-11 72.4 139 32.4
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.1e-10 72.0 142 31.7
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.8e-10 71.2 164 31.7
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 2.4e-10 70.9 162 31.5
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 3.2e-10 70.5 142 31.7
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 3.2e-10 70.5 137 32.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.2e-10 70.5 142 33.1
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 4.1e-10 70.1 142 31.7
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 5.4e-10 69.7 138 30.4
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 5.4e-10 69.7 139 30.9
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 7.0e-10 69.3 168 28.0
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 7.0e-10 69.3 142 30.3
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.0e-10 69.3 162 30.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 7.0e-10 69.3 142 32.4
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.0e-10 69.3 137 32.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.2e-09 68.6 137 31.4
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.2e-09 68.6 139 30.9
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.6e-09 68.2 142 31.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.6e-09 68.2 141 29.8
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.6e-09 68.2 139 32.4
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.6e-09 68.2 164 30.5
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.7e-09 67.4 142 30.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.5e-09 67.0 142 32.4
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 3.5e-09 67.0 161 30.4
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 4.5e-09 66.6 164 29.3
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 4.5e-09 66.6 139 33.8
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 5.9e-09 66.2 116 31.9
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 7.8e-09 65.9 161 30.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.3e-08 65.1 160 30.0
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-08 64.7 139 31.7
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-08 64.7 139 31.7
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.3e-08 64.3 159 30.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.3e-08 64.3 139 31.7
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.3e-08 64.3 139 31.7
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.3e-08 64.3 142 29.6
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.9e-08 63.9 139 31.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 3.9e-08 63.5 160 29.4
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 5.0e-08 63.2 160 30.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 8.6e-08 62.4 119 31.1
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.5e-07 61.6 139 30.9
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.5e-07 60.8 139 28.8
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.5e-07 60.8 122 30.3
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 3.3e-07 60.5 141 26.2
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 3.3e-07 60.5 180 26.1
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 5.6e-07 59.7 138 30.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 7.3e-07 59.3 115 27.8


User provided reference genes

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