Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 0.0e+00 1088.2 521 100.0
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.9e-74 284.3 517 34.4
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.7e-68 263.8 519 33.7
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 3.0e-67 260.4 508 34.1
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 8.7e-67 258.8 501 35.3
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 5.6e-66 256.1 514 33.1
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 5.6e-66 256.1 517 33.8
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 2.8e-65 253.8 517 32.5
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 3.7e-65 253.4 520 33.5
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 4.8e-65 253.1 518 32.6
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 4.8e-65 253.1 518 32.6
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 4.8e-65 253.1 518 32.6
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.2e-65 252.7 517 31.9
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 5.3e-64 249.6 516 32.9
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 6.9e-64 249.2 520 32.7
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 6.9e-64 249.2 520 32.7
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.5e-63 248.1 511 32.5
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.5e-63 248.1 514 33.1
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 5.8e-63 246.1 518 33.4
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 5.8e-63 246.1 514 33.7
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.3e-62 245.0 513 33.5
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.7e-62 244.6 518 32.6
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.2e-62 244.2 513 33.3
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.8e-62 243.4 518 31.5
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.8e-62 243.4 530 31.7
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.5e-62 242.7 513 32.4
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.5e-62 242.7 514 33.5
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 6.5e-62 242.7 517 32.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 6.5e-62 242.7 513 32.2
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 6.5e-62 242.7 513 32.9
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 8.4e-62 242.3 518 32.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.4e-61 241.5 519 31.8
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.4e-61 241.5 530 30.9
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.2e-61 240.0 509 31.2
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.2e-60 238.4 517 32.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 3.5e-60 236.9 533 31.9
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.6e-60 236.5 513 29.8
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.0e-59 235.3 518 31.7
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.8e-59 234.6 528 33.1
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.3e-59 234.2 514 33.3
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 2.3e-59 234.2 514 32.1
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.0e-59 233.8 517 32.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.1e-59 233.0 515 32.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.1e-59 233.0 516 32.8
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.7e-59 232.6 515 34.0
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 8.7e-59 232.3 513 32.2
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 8.7e-59 232.3 511 31.3
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 8.7e-59 232.3 517 30.6
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.1e-58 231.9 514 31.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.1e-58 231.9 513 31.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.1e-58 231.9 517 31.5
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.5e-58 230.7 516 31.4
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 4.3e-58 229.9 510 30.2
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 4.3e-58 229.9 516 30.4
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 5.7e-58 229.6 519 31.0
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 7.4e-58 229.2 519 31.4
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 9.6e-58 228.8 519 31.8
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.3e-57 228.4 514 31.1
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.3e-57 228.4 514 31.9
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.6e-57 228.0 511 31.9
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.1e-57 227.6 514 32.7
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 3.7e-57 226.9 510 30.2
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.2e-57 226.1 506 31.8
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-56 224.6 523 31.5
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.4e-56 224.2 515 31.7
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.4e-56 224.2 526 29.5
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.4e-56 224.2 517 31.5
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.4e-56 224.2 510 31.2
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.1e-56 223.4 518 30.7
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 4.1e-56 223.4 509 31.2
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.0e-56 222.2 511 30.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 9.0e-56 222.2 519 31.6
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.2e-55 221.9 517 29.4
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.5e-55 221.5 511 30.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.5e-55 221.5 486 31.5
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.5e-55 221.5 510 30.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.6e-55 220.7 508 33.5
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 7.6e-55 219.2 512 31.8
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.3e-54 218.4 519 30.4
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.9e-54 217.2 513 30.6
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.8e-54 216.9 517 30.0
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 6.5e-54 216.1 514 30.4
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.4e-53 214.9 518 30.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.5e-53 214.2 510 30.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.8e-51 208.0 497 31.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.8e-51 208.0 444 33.1
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 5.1e-51 206.5 517 29.8
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.5e-50 204.1 519 29.9
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.5e-50 204.1 519 29.9
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.5e-50 204.1 519 29.9
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 3.3e-50 203.8 546 29.1
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 9.7e-50 202.2 490 30.6
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.3e-49 201.8 516 29.8
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.8e-49 200.7 509 30.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.4e-48 197.6 512 29.5
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.3e-48 196.4 520 28.8
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 5.3e-48 196.4 531 29.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.9e-48 196.1 444 32.2
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 9.0e-48 195.7 514 28.0
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.6e-47 194.1 527 28.7
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.2e-46 191.0 487 29.8
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.2e-45 186.8 526 28.3
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 7.2e-45 186.0 471 29.1
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 3.9e-43 180.3 208 47.1
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 3.9e-43 180.3 190 49.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.8e-43 179.1 484 27.7
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.3e-42 177.2 470 30.0
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.3e-42 177.2 396 32.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.7e-41 174.9 447 28.9
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.8e-41 173.3 410 32.0
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.1e-40 172.2 455 29.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.5e-39 168.3 520 26.5
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 4.5e-39 166.8 457 28.4
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.9e-39 166.4 446 30.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.7e-38 164.9 188 46.3
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.6e-36 158.3 518 28.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.0e-35 154.1 191 42.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.0e-34 151.4 455 27.7
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 2.0e-34 151.4 517 24.2
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.6e-34 151.0 447 26.8
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.4e-34 150.2 523 25.0
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.4e-32 144.4 184 43.5
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 4.1e-32 143.7 562 27.4
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 7.0e-32 142.9 192 41.1
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.6e-31 141.7 382 30.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.5e-31 140.6 513 25.9
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 4.4e-26 123.6 239 31.8
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-24 119.0 393 27.0
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 4.5e-23 113.6 146 42.5
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 5.9e-23 113.2 139 42.4
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.7e-20 104.4 130 46.9
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.2e-15 89.0 255 31.8
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.1e-13 82.4 304 25.3
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 3.2e-13 80.9 89 41.6
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.0e-12 76.3 164 29.9
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 6.8e-11 73.2 385 21.6
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.1e-08 64.3 152 31.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 4.1e-08 63.9 71 45.1
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.2e-07 62.4 223 30.9
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.0e-06 59.3 91 40.7


User provided reference genes

Program Settings