Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.0e-175 619.0 308 100.0
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.5e-50 204.1 300 37.7
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 3.3e-50 203.0 297 38.4
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.4e-50 202.6 300 37.3
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.3e-49 201.1 299 38.5
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.8e-48 197.2 295 36.6
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 4.1e-48 196.1 298 37.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 5.3e-48 195.7 301 36.9
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 7.0e-48 195.3 297 38.0
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.6e-47 194.1 298 36.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 2.7e-47 193.4 301 37.9
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.7e-47 193.4 296 36.1
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 2.7e-47 193.4 299 38.5
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 3.5e-47 193.0 299 37.5
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 7.7e-47 191.8 294 38.4
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.3e-46 191.0 301 37.2
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.3e-46 191.0 301 37.2
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.8e-46 189.5 315 35.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 6.5e-46 188.7 298 35.9
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 8.5e-46 188.3 315 36.5
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.1e-45 188.0 294 35.4
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.9e-45 187.2 311 35.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 3.2e-45 186.4 319 35.1
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 4.2e-45 186.0 301 37.5
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 5.5e-45 185.7 297 36.0
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.6e-44 184.1 299 35.1
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.1e-44 183.7 319 33.9
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 3.6e-44 183.0 297 35.4
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 3.6e-44 183.0 297 35.0
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.7e-44 182.6 297 33.7
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.1e-44 182.2 325 35.1
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 8.0e-44 181.8 307 35.2
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.0e-43 181.4 306 36.9
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.3e-43 180.3 297 33.7
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 2.3e-43 180.3 289 34.9
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.3e-43 180.3 291 37.5
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.3e-43 180.3 297 36.4
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.0e-43 179.9 303 35.6
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.0e-43 179.9 313 34.5
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 4.0e-43 179.5 311 36.7
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 5.2e-43 179.1 299 35.1
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 5.2e-43 179.1 290 37.2
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 6.8e-43 178.7 298 34.2
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 8.8e-43 178.3 311 35.0
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 8.8e-43 178.3 309 35.0
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.5e-42 177.6 299 35.1
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.0e-42 177.2 293 36.9
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.6e-42 176.8 315 34.9
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.7e-42 175.6 299 33.4
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 5.7e-42 175.6 313 36.1
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 7.5e-42 175.3 326 33.7
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 9.8e-42 174.9 301 34.9
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.7e-41 174.1 302 33.8
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.7e-41 174.1 343 32.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 2.2e-41 173.7 311 33.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.8e-41 173.3 310 35.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 2.8e-41 173.3 313 35.1
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.7e-41 172.9 302 35.8
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.7e-41 172.9 305 33.4
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.7e-41 172.9 298 34.9
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 3.7e-41 172.9 298 34.9
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 4.8e-41 172.6 301 35.2
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 4.8e-41 172.6 304 34.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 6.3e-41 172.2 297 35.7
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 6.3e-41 172.2 315 34.3
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 6.3e-41 172.2 303 34.0
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-40 171.4 313 33.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.8e-40 170.6 302 35.4
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 4.1e-40 169.5 312 33.3
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 4.1e-40 169.5 306 33.3
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 7.0e-40 168.7 293 34.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 9.1e-40 168.3 309 34.0
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.6e-39 167.5 270 36.7
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.6e-39 167.5 300 35.0
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.7e-39 166.8 298 36.6
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 3.5e-39 166.4 282 34.0
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.7e-39 165.2 297 34.3
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.3e-38 164.5 298 34.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.3e-38 163.7 295 34.2
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.5e-37 161.0 281 35.2
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 7.2e-37 158.7 326 31.6
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 7.2e-37 158.7 266 35.7
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.7e-36 156.0 314 32.5
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.7e-36 156.0 314 32.2
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.4e-35 154.5 316 31.0
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 4.4e-34 149.4 300 32.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.8e-33 146.7 301 33.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 3.7e-33 146.4 323 31.6
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.1e-32 144.8 241 35.3
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.4e-32 143.7 198 37.9
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 5.4e-32 142.5 309 31.1
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.6e-31 141.0 274 32.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 5.9e-31 139.0 393 25.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 2.8e-28 130.2 232 34.5
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.7e-28 129.4 214 36.4
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.4e-27 127.9 213 36.2
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.7e-25 119.8 158 39.2
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 6.4e-25 119.0 289 29.1
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.3e-22 111.3 246 34.6
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.3e-22 110.5 290 28.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.3e-22 110.5 291 29.2
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 5.0e-22 109.4 313 27.8
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 5.0e-22 109.4 282 29.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 5.0e-22 109.4 292 27.7
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 6.6e-22 109.0 265 29.1
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.5e-21 107.8 294 27.2
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 2.5e-21 107.1 281 27.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 3.3e-21 106.7 275 28.4
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.3e-21 106.3 279 28.3
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 4.3e-21 106.3 293 27.6
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 4.3e-21 106.3 280 28.2
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 4.3e-21 106.3 275 28.4
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 5.6e-21 105.9 278 28.1
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 5.6e-21 105.9 299 27.4
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 9.5e-21 105.1 293 26.3
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.2e-20 104.8 287 27.9
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.2e-20 104.8 265 29.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 1.2e-20 104.8 279 28.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 1.2e-20 104.8 279 28.3
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.6e-20 104.4 294 27.2
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.6e-20 104.4 275 28.4
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.8e-20 103.6 282 28.7
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.8e-20 103.6 274 28.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 3.6e-20 103.2 283 28.3
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 4.7e-20 102.8 278 27.0
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 4.7e-20 102.8 278 27.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 4.7e-20 102.8 293 27.6
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 6.2e-20 102.4 286 28.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 8.0e-20 102.1 280 27.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.4e-19 101.3 278 28.8
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.8e-19 100.9 283 29.0
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.8e-19 100.9 279 26.9
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.3e-19 100.5 279 27.2
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.3e-19 100.5 293 27.3
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 3.1e-19 100.1 294 26.9
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.1e-19 100.1 273 27.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.1e-19 100.1 273 27.8
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 3.1e-19 100.1 278 27.3
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 3.1e-19 100.1 293 27.3
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 4.0e-19 99.8 278 26.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 5.2e-19 99.4 278 27.3
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.2e-19 99.4 293 26.6
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 6.8e-19 99.0 293 25.9
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 8.9e-19 98.6 293 26.6
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.0e-18 97.4 279 27.6
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 2.0e-18 97.4 291 26.5
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 3.4e-18 96.7 268 27.6
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 3.4e-18 96.7 275 27.3
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 7.5e-18 95.5 271 28.0
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.7e-17 94.4 276 27.2
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.7e-17 93.2 157 35.7
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.4e-16 91.3 246 28.5
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.9e-16 90.9 286 26.2
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.4e-16 90.5 275 28.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 3.2e-16 90.1 294 26.5
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.1e-13 81.6 150 32.7
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.1e-13 81.6 191 27.7
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.2e-12 78.2 217 24.9
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 2.3e-11 73.9 277 23.5
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 3.1e-11 73.6 162 30.9
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 9.9e-10 68.6 148 29.1
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.7e-06 57.8 366 24.9
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.9e-06 56.6 133 30.1


User provided reference genes

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