Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 2.1e-233 812.0 418 100.0
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.6e-138 496.1 369 73.2
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.8e-67 260.8 402 38.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 7.7e-66 255.4 394 39.6
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.9e-65 253.4 416 38.2
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.9e-65 253.4 416 38.5
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.9e-65 253.4 416 38.2
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.9e-65 253.4 416 38.2
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.9e-65 253.4 416 38.5
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 1.5e-64 251.1 417 38.4
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.9e-64 250.8 416 38.5
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 3.2e-64 250.0 417 37.6
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 7.2e-64 248.8 421 36.1
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 7.2e-64 248.8 421 37.5
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 7.2e-64 248.8 421 37.5
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 9.4e-64 248.4 420 37.6
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.1e-63 247.3 420 36.7
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 8.0e-63 245.4 424 37.7
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 8.0e-63 245.4 418 38.0
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.0e-62 245.0 421 37.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.0e-62 245.0 421 37.5
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.0e-62 245.0 421 37.1
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.4e-62 244.6 426 37.1
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.8e-62 244.2 417 36.7
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.3e-62 243.8 421 37.8
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.0e-62 243.0 442 37.8
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.2e-62 242.7 427 36.8
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 6.8e-62 242.3 417 37.2
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 6.8e-62 242.3 417 37.9
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 8.8e-62 241.9 423 36.2
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.2e-61 241.5 427 36.1
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.2e-61 241.5 427 37.7
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 1.5e-61 241.1 419 36.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.5e-61 241.1 420 36.4
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.5e-61 241.1 422 36.5
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.0e-61 240.7 427 38.4
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.0e-61 240.7 422 36.3
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.6e-61 240.4 417 36.7
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.6e-61 240.4 420 36.2
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 5.7e-61 239.2 414 36.7
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 7.5e-61 238.8 427 36.5
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.5e-61 238.8 430 35.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 7.5e-61 238.8 428 39.3
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 9.8e-61 238.4 423 35.9
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 9.8e-61 238.4 428 36.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.3e-60 238.0 415 36.6
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.2e-60 237.3 418 35.4
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.7e-60 236.5 424 36.6
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.7e-60 236.5 420 35.2
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.8e-60 236.1 429 35.4
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 4.8e-60 236.1 431 35.5
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 6.3e-60 235.7 405 37.0
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 8.3e-60 235.3 432 38.0
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 8.3e-60 235.3 423 36.4
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 8.3e-60 235.3 415 35.7
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.1e-59 235.0 422 35.3
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.4e-59 234.6 418 35.4
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.4e-59 234.6 427 35.6
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-59 234.2 424 36.1
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.4e-59 233.8 428 35.5
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 5.4e-59 232.6 420 35.5
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 7.0e-59 232.3 427 36.3
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 7.0e-59 232.3 426 36.4
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 7.0e-59 232.3 423 35.7
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 9.1e-59 231.9 426 36.6
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 9.1e-59 231.9 418 36.4
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 9.1e-59 231.9 425 36.5
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 9.1e-59 231.9 425 36.2
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 9.1e-59 231.9 419 35.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-58 231.5 424 35.8
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.2e-58 231.5 422 37.0
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.6e-58 231.1 429 35.4
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.6e-58 231.1 428 36.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.6e-58 231.1 424 36.3
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.0e-58 230.7 424 35.8
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 2.0e-58 230.7 421 36.3
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 2.7e-58 230.3 427 35.4
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.9e-58 229.2 424 34.9
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.9e-58 229.2 425 35.1
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 5.9e-58 229.2 434 35.5
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 7.7e-58 228.8 444 34.2
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 7.7e-58 228.8 418 35.2
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.0e-57 228.4 418 34.9
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.0e-57 226.1 426 34.7
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 8.6e-57 225.3 418 34.9
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 8.6e-57 225.3 421 35.9
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 8.6e-57 225.3 419 34.6
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 4.2e-56 223.0 418 35.9
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 4.2e-56 223.0 426 34.5
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.6e-55 221.1 430 34.4
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.1e-55 220.7 396 39.4
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 3.6e-55 219.9 424 36.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.7e-55 219.5 442 36.0
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 4.7e-55 219.5 423 35.5
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 4.7e-55 219.5 405 35.6
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.0e-54 218.4 420 35.2
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 2.3e-54 217.2 429 35.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.3e-54 217.2 409 33.7
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 5.2e-54 216.1 460 33.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 4.4e-53 213.0 439 34.4
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 7.5e-53 212.2 418 36.1
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 7.5e-53 212.2 386 36.8
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.3e-52 208.8 424 33.5
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.8e-51 207.6 432 35.2
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.0e-51 205.7 459 34.0
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 9.2e-51 205.3 466 34.3
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 2.7e-50 203.8 433 32.3
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.0e-49 201.8 422 32.7
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.9e-49 200.3 469 31.3
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 6.6e-49 199.1 391 35.3
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 7.3e-48 195.7 423 34.8
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 8.0e-47 192.2 424 33.0
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.5e-45 188.0 340 36.5
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.7e-44 184.5 420 30.7
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.8e-43 181.0 429 32.6
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.6e-42 177.9 381 34.9
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 4.6e-42 176.4 472 32.0
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.3e-41 174.9 433 30.0
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.0e-41 173.7 506 28.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 7.3e-40 169.1 324 34.3
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 9.5e-40 168.7 533 28.5
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.2e-39 166.0 408 29.7
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.2e-35 153.7 339 33.0
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.7e-34 150.6 410 28.0
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.7e-34 150.6 408 29.4
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 7.8e-34 149.1 344 32.8
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 3.3e-32 143.7 390 31.3
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.3e-32 143.3 361 30.7
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 6.6e-25 119.4 423 27.4
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 9.9e-13 79.0 122 36.9
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.4e-11 75.1 83 42.2
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 2.4e-11 74.3 126 38.1


User provided reference genes

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