Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 0.0e+00 3011.1 1539 100.0
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 0.0e+00 1092.8 1557 43.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.7e-294 1016.1 1620 40.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 2.6e-119 434.9 1288 28.6
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 6.7e-115 420.2 1274 27.9
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 3.3e-114 417.9 1281 28.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 3.7e-113 414.5 1279 29.0
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 1.8e-112 412.1 1279 28.8
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 1.8e-112 412.1 1282 27.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.4e-112 411.8 1282 28.9
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 3.1e-112 411.4 1288 28.6
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 3.1e-112 411.4 1295 29.0
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 3.1e-112 411.4 1280 28.8
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 5.3e-112 410.6 1298 28.7
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 6.9e-112 410.2 1289 28.5
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 6.9e-112 410.2 1269 29.1
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 6.9e-112 410.2 1265 28.2
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 9.0e-112 409.8 1281 28.6
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 1.2e-111 409.5 1280 28.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 1.5e-111 409.1 1283 28.5
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 1.5e-111 409.1 1287 28.4
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 2.0e-111 408.7 1279 28.4
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 2.6e-111 408.3 1280 27.7
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 3.4e-111 407.9 1276 28.4
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 3.4e-111 407.9 1318 27.2
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 3.4e-111 407.9 1318 27.2
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 4.5e-111 407.5 1280 28.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 5.8e-111 407.1 1281 28.5
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 5.8e-111 407.1 1269 28.7
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 5.8e-111 407.1 1272 28.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 5.8e-111 407.1 1279 28.3
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 5.8e-111 407.1 1271 28.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 7.6e-111 406.8 1273 27.9
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 7.6e-111 406.8 1279 27.8
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 1.0e-110 406.4 1269 28.8
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 1.7e-110 405.6 1279 28.2
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 2.9e-110 404.8 1269 28.4
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 2.9e-110 404.8 1269 28.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 3.8e-110 404.4 1276 28.1
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 3.8e-110 404.4 1273 27.5
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 3.8e-110 404.4 1269 28.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 4.9e-110 404.1 1266 28.8
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 6.5e-110 403.7 1276 27.7
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 6.5e-110 403.7 1276 27.7
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 6.5e-110 403.7 1276 28.5
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 8.4e-110 403.3 1276 27.7
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 8.4e-110 403.3 1291 27.9
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 1.1e-109 402.9 1276 27.7
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 1.1e-109 402.9 1276 27.7
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 1.4e-109 402.5 1294 27.8
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 1.4e-109 402.5 1284 28.0
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 2.5e-109 401.7 1273 28.3
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 2.5e-109 401.7 1275 28.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 3.2e-109 401.4 1275 28.5
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 5.5e-109 400.6 1262 29.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 7.1e-109 400.2 885 32.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 9.3e-109 399.8 1280 28.0
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 9.3e-109 399.8 1273 28.1
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 9.3e-109 399.8 1268 28.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 9.3e-109 399.8 868 33.5
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 9.3e-109 399.8 868 33.5
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 9.3e-109 399.8 1274 27.6
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 9.3e-109 399.8 1279 27.7
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 9.3e-109 399.8 806 34.2
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 1.2e-108 399.4 815 33.7
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 1.2e-108 399.4 1277 27.5
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 1.6e-108 399.1 1273 28.0
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 1.6e-108 399.1 1280 27.8
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 1.6e-108 399.1 1278 27.8
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 1.6e-108 399.1 1273 28.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 3.5e-108 397.9 1277 27.5
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 4.6e-108 397.5 1282 27.9
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 6.0e-108 397.1 1281 27.5
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 6.0e-108 397.1 1272 27.7
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 6.0e-108 397.1 821 33.3
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 7.9e-108 396.7 1268 28.7
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 7.9e-108 396.7 1309 28.4
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 1.0e-107 396.4 1267 28.3
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 1.0e-107 396.4 1267 28.3
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 1.3e-107 396.0 1278 27.6
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 2.3e-107 395.2 1277 27.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 3.0e-107 394.8 815 33.3
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 3.0e-107 394.8 1276 28.5
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 3.0e-107 394.8 1270 28.5
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 3.0e-107 394.8 1277 27.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 3.9e-107 394.4 822 32.5
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 3.9e-107 394.4 937 31.3
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 6.7e-107 393.7 1274 27.6
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 6.7e-107 393.7 1274 27.6
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 6.7e-107 393.7 1280 27.5
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 8.7e-107 393.3 815 33.1
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 1.9e-106 392.1 1267 27.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 1.9e-106 392.1 813 33.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 2.5e-106 391.7 897 31.8
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 2.5e-106 391.7 897 31.8
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 3.3e-106 391.3 818 33.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 4.3e-106 391.0 1263 28.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 5.7e-106 390.6 1282 27.5
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 5.7e-106 390.6 1276 27.4
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 5.7e-106 390.6 799 32.9
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 9.7e-106 389.8 1279 27.1
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 1.3e-105 389.4 816 33.0
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 1.3e-105 389.4 1296 27.5
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 1.6e-105 389.0 809 32.9
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 4.8e-105 387.5 806 33.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 8.2e-105 386.7 815 33.0
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 1.1e-104 386.3 807 33.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 3.1e-104 384.8 866 32.2
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 2.0e-103 382.1 1267 27.5
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 2.0e-103 382.1 813 32.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 2.2e-102 378.6 1271 27.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 5.5e-101 374.0 1279 27.1
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 2.7e-100 371.7 1276 27.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 2.3e-99 368.6 1331 27.3
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 2.0e-90 339.0 1149 26.5
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 1.4e-88 332.8 467 40.7
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 5.3e-80 304.3 1157 27.0
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 2.5e-77 295.4 1152 26.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 9.4e-77 293.5 1152 26.8
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 6.7e-75 287.3 1243 26.1
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 3.7e-73 281.6 408 40.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 3.4e-58 231.9 1007 25.8
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 3.8e-54 218.4 987 25.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.6e-28 133.3 174 37.9
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 3.9e-22 112.1 120 40.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.8e-19 103.2 527 23.3
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.6e-12 80.1 315 25.1
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 6.9e-11 74.7 316 24.4
CBR_g42088 Chara braunii HOM05D004435 ORTHO05D005103 3.8e-09 68.9 90 50.0
CBR_g63098 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-09 68.2 35 88.6
CBR_g8510 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-09 67.8 36 83.3
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.1e-08 67.4 84 47.6
CBR_g31124 Chara braunii HOM05D001444 ORTHO05D004695 2.4e-08 66.2 173 33.5
CBR_g12949 Chara braunii HOM05D000019 ORTHO05D001702 4.2e-08 65.5 35 82.9
CBR_g46620 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-08 65.5 57 66.7
CBR_g34596 Chara braunii HOM05D000907 ORTHO05D021274 5.4e-08 65.1 67 53.7
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 9.3e-08 64.3 720 20.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.1e-07 63.2 48 50.0
CBR_g8377 Chara braunii HOM05D000019 ORTHO05D000353 3.5e-07 62.4 44 65.9
CBR_g37989 Chara braunii HOM05D001238 ORTHO05D009999 6.0e-07 61.6 35 80.0
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 6.0e-07 61.6 39 74.4
CBR_g81562 Chara braunii HOM05D002204 ORTHO05D002875 7.9e-07 61.2 42 69.0
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 5.1e-06 58.5 237 24.9


User provided reference genes

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