Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 8.0e-291 1003.0 512 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 6.5e-99 365.5 350 53.1
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 9.7e-95 351.7 336 51.5
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.8e-94 349.4 336 49.7
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 6.3e-94 349.0 335 50.4
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.1e-93 348.2 337 50.1
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.1e-93 348.2 318 55.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.8e-93 347.4 335 49.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.4e-93 347.1 335 50.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 3.1e-93 346.7 342 50.0
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.1e-93 346.7 335 51.0
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.1e-93 346.3 286 57.3
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 2.0e-92 344.0 335 49.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.0e-92 344.0 329 52.9
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.6e-92 343.6 335 51.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 3.4e-92 343.2 336 48.8
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.5e-92 342.8 336 49.4
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.5e-92 342.8 332 51.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.9e-92 342.4 388 45.6
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 7.7e-92 342.0 342 50.3
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 7.7e-92 342.0 332 50.6
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 7.7e-92 342.0 344 48.5
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.3e-91 341.3 335 49.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.2e-91 340.5 336 49.7
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.2e-91 340.5 341 49.6
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.2e-91 340.5 335 49.9
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 2.9e-91 340.1 332 49.7
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.8e-91 339.7 335 50.1
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.8e-91 339.7 335 50.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.8e-91 339.7 348 47.7
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.8e-91 339.7 332 50.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 5.0e-91 339.3 344 48.5
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 6.5e-91 339.0 335 51.3
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.5e-91 339.0 336 48.8
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 6.5e-91 339.0 336 49.1
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 8.5e-91 338.6 336 48.8
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.1e-90 338.2 336 49.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.4e-90 337.8 335 49.3
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.9e-90 337.4 337 49.0
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.5e-90 337.0 336 49.1
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.5e-90 337.0 336 49.4
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.5e-90 337.0 336 49.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.2e-90 336.7 332 49.4
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-90 336.7 360 47.5
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 4.2e-90 336.3 342 48.5
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 4.2e-90 336.3 332 49.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.5e-90 335.9 336 48.2
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.5e-90 335.9 336 48.2
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 5.5e-90 335.9 337 49.0
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 7.2e-90 335.5 336 48.8
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 7.2e-90 335.5 367 46.6
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 7.2e-90 335.5 335 49.0
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 7.2e-90 335.5 335 49.9
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 9.4e-90 335.1 336 49.4
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 9.4e-90 335.1 337 49.6
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.6e-89 334.3 344 47.7
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.6e-89 334.3 336 49.1
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.6e-89 334.3 337 48.4
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.6e-89 334.3 335 49.9
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.6e-89 334.3 335 49.0
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.1e-89 334.0 336 48.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.1e-89 334.0 336 49.1
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 3.6e-89 333.2 337 48.7
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 3.6e-89 333.2 335 48.4
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 3.6e-89 333.2 332 51.2
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.6e-89 333.2 332 49.1
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.6e-89 333.2 335 48.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 4.7e-89 332.8 335 49.6
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 6.1e-89 332.4 335 49.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.1e-89 332.4 360 46.7
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 7.9e-89 332.0 332 49.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 7.9e-89 332.0 324 50.6
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.8e-88 330.9 355 47.3
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.3e-88 330.5 336 49.1
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.2e-88 329.3 332 50.6
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 6.7e-88 328.9 337 48.4
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.5e-87 327.8 335 48.1
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.5e-87 327.8 335 48.1
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.0e-87 327.4 336 49.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.0e-87 327.4 336 48.5
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-87 327.0 360 46.1
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.3e-87 326.6 337 49.0
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.3e-87 326.6 393 43.5
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 5.7e-87 325.9 339 47.8
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 9.7e-87 325.1 337 48.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.3e-86 324.7 336 47.6
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.4e-85 321.2 333 48.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.1e-85 319.7 337 46.3
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-84 317.8 374 44.1
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-84 317.4 355 45.1
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.0e-80 305.1 336 47.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.0e-80 305.1 336 47.0
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 4.0e-80 303.1 372 43.3
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 5.2e-80 302.8 336 45.8
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 5.2e-80 302.8 319 47.3
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 6.7e-80 302.4 332 46.1
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.7e-79 298.5 353 43.3
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.3e-78 295.8 336 45.2
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.4e-77 294.7 291 49.5
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-77 294.7 333 45.3
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.4e-77 294.7 336 45.2
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.4e-77 293.9 337 44.8
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.6e-76 291.2 353 44.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-76 291.2 335 44.5
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-76 290.4 338 42.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 4.2e-74 283.1 292 49.0
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.0e-72 276.9 283 47.3
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.3e-70 271.6 337 42.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-70 271.6 336 42.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 2.0e-68 264.2 328 43.0
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.5e-68 263.5 360 41.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 5.5e-66 256.1 272 47.1
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 2.8e-65 253.8 277 46.6
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 6.1e-65 252.7 271 47.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 6.8e-64 249.2 273 46.9
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.2e-63 248.4 206 53.4
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 4.4e-63 246.5 306 44.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.8e-59 233.4 261 46.0
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 3.8e-59 233.4 341 38.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.3e-56 224.2 340 38.8
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.2e-54 217.6 335 37.0
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 6.4e-54 216.1 336 36.3
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.4e-53 214.2 384 36.7
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.0e-51 207.2 336 36.3
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 5.8e-47 193.0 152 57.2
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 9.5e-42 175.6 246 41.5
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 3.7e-38 163.7 331 33.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.9e-38 163.3 131 57.3
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.7e-22 111.7 145 44.1
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.4e-21 106.7 96 46.9
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 3.5e-20 104.0 336 25.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.6e-20 103.6 200 29.0
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 8.7e-19 99.4 132 37.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.8e-17 93.6 87 52.9
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-16 92.0 87 51.7
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.6e-12 77.0 75 53.3
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 9.6e-10 69.3 87 42.5
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 8.1e-09 66.2 96 41.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.1e-08 65.9 45 68.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-07 61.6 64 50.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-07 60.5 62 50.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 8.4e-06 56.2 105 31.4


User provided reference genes

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