Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 3.1e-64 248.4 138 100.0
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 5.9e-31 137.9 131 58.8
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.3e-30 136.7 132 56.8
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-30 136.0 135 56.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.3e-30 136.0 135 56.3
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.3e-30 136.0 131 56.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.9e-30 135.6 136 56.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 2.9e-30 135.6 136 56.6
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.9e-30 135.6 132 56.1
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.9e-30 135.6 136 55.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.8e-30 135.2 135 56.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.8e-30 135.2 135 56.3
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.8e-30 135.2 136 55.9
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.8e-30 135.2 136 55.9
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.8e-30 135.2 135 55.6
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 5.0e-30 134.8 136 55.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.0e-30 134.8 135 55.6
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.6e-30 134.4 145 58.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 6.6e-30 134.4 135 55.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 6.6e-30 134.4 137 56.9
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 6.6e-30 134.4 136 56.6
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 8.6e-30 134.0 135 55.6
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 8.6e-30 134.0 136 55.1
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 8.6e-30 134.0 135 55.6
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.5e-29 133.3 137 55.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.9e-29 132.9 138 54.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.9e-29 132.9 138 54.3
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.9e-29 132.9 132 53.0
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.5e-29 132.5 135 55.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.3e-29 132.1 135 55.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 3.3e-29 132.1 135 54.1
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 3.3e-29 132.1 136 55.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 3.3e-29 132.1 136 55.1
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.3e-29 132.1 135 54.8
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.2e-29 131.7 136 55.9
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.2e-29 131.7 136 54.4
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 5.5e-29 131.3 135 54.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.5e-29 131.3 135 54.1
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 5.5e-29 131.3 137 55.5
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 5.5e-29 131.3 135 54.8
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 7.2e-29 131.0 136 53.7
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 7.2e-29 131.0 136 53.7
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 7.2e-29 131.0 135 54.8
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.2e-28 130.2 138 55.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.6e-28 129.8 137 54.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.1e-28 129.4 139 56.8
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.6e-28 128.6 137 53.3
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.6e-28 128.6 135 54.1
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 3.6e-28 128.6 135 53.3
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 4.7e-28 128.3 138 54.3
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 6.1e-28 127.9 138 53.6
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 6.1e-28 127.9 135 54.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 8.0e-28 127.5 135 51.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.0e-28 127.5 135 51.9
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 8.0e-28 127.5 135 51.9
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.0e-28 127.5 137 53.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 8.0e-28 127.5 135 52.6
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 8.0e-28 127.5 135 54.1
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 8.0e-28 127.5 135 55.6
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.8e-27 126.3 138 51.4
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.8e-27 126.3 139 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.3e-27 125.9 133 54.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.3e-27 125.9 136 52.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.0e-27 125.6 131 54.2
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.0e-27 125.6 135 52.6
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 4.0e-27 125.2 138 50.7
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 5.2e-27 124.8 137 52.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 5.2e-27 124.8 138 52.9
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 5.2e-27 124.8 149 51.0
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 6.8e-27 124.4 136 51.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.9e-27 124.0 135 52.6
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 8.9e-27 124.0 138 51.4
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 8.9e-27 124.0 136 51.5
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.5e-26 123.2 141 50.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.0e-26 122.9 138 50.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.0e-26 122.9 137 53.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.0e-26 122.9 137 52.6
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.0e-26 122.9 137 51.8
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.6e-26 122.5 141 50.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 4.4e-26 121.7 137 50.4
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 4.4e-26 121.7 140 51.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.4e-26 121.7 137 52.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.7e-26 121.3 137 51.1
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 5.7e-26 121.3 137 51.8
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.7e-26 121.3 137 51.8
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.5e-26 120.9 141 48.9
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 7.5e-26 120.9 137 49.6
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 9.8e-26 120.6 137 51.8
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 9.8e-26 120.6 144 48.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.3e-25 120.2 137 50.4
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.3e-25 120.2 143 48.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-25 119.8 145 49.7
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.2e-25 119.4 137 50.4
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.9e-25 119.0 137 49.6
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.7e-25 118.6 115 58.3
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 6.3e-25 117.9 138 48.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-24 115.9 146 46.6
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-24 115.9 148 50.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-24 115.9 132 49.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-24 115.9 148 50.0
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.2e-24 115.5 132 53.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.1e-24 115.2 112 58.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.4e-24 114.8 135 51.1
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 5.4e-24 114.8 129 50.4
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.4e-24 114.8 130 48.5
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 7.0e-24 114.4 152 48.7
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 9.2e-24 114.0 149 47.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.2e-23 113.6 128 49.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-23 112.8 152 46.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-23 112.8 152 46.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.7e-23 112.5 138 49.3
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.5e-23 112.1 161 45.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 7.8e-23 110.9 157 45.9
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.0e-22 110.5 113 53.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-22 110.2 112 55.4
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.7e-22 109.8 170 41.2
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.9e-22 108.6 115 53.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.5e-21 105.9 175 42.3
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.5e-21 105.9 119 53.8
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.6e-20 103.2 167 40.1
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.1e-20 102.8 160 40.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-20 102.4 125 51.2
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.6e-18 95.9 165 40.6
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.4e-18 95.5 97 56.7
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 5.8e-18 94.7 111 48.6
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 9.8e-18 94.0 130 46.9
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.3e-17 93.6 109 48.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-17 92.8 132 43.9
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.4e-17 91.3 116 48.3
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 8.3e-17 90.9 132 43.9
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.3e-14 82.8 121 43.0
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-14 82.4 77 58.4
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.6e-14 80.9 78 56.4
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.6e-14 80.9 77 58.4
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.5e-13 79.3 73 60.3
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.3e-13 79.0 78 55.1
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 3.3e-13 79.0 133 41.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.8e-12 75.9 73 56.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.8e-12 75.9 77 53.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 8.1e-12 74.3 85 48.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.0e-11 72.0 68 58.8
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 4.0e-11 72.0 85 47.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 4.4e-10 68.6 68 58.8
PRCOL_00001918 Prasinoderma coloniale HOM05D004301 ORTHO05D005124 6.4e-09 64.7 159 32.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.4e-08 62.8 108 40.7
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-06 57.4 68 48.5
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-06 57.0 68 44.1


User provided reference genes

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