Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.0e-268 929.5 471 100.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 7.8e-224 780.4 472 86.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.7e-223 779.2 472 85.8
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 9.7e-134 481.1 466 55.2
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 5.9e-131 471.9 469 53.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.2e-130 469.9 472 53.0
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 8.5e-130 468.0 468 53.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.9e-129 466.8 471 53.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.9e-129 466.8 471 53.7
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-129 466.1 471 53.5
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 4.2e-129 465.7 468 53.0
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 5.5e-129 465.3 471 53.5
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 9.4e-129 464.5 471 52.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 9.4e-129 464.5 464 52.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.2e-128 464.2 471 51.6
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.6e-128 463.8 466 54.3
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.6e-128 463.8 468 53.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.1e-128 463.4 471 53.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.1e-128 463.4 468 54.3
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.7e-128 463.0 467 52.0
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.7e-128 463.0 468 52.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.7e-128 463.0 471 53.5
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.6e-128 462.6 467 53.3
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.6e-128 462.6 465 52.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.6e-128 462.6 469 52.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 4.7e-128 462.2 461 53.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 6.1e-128 461.8 468 52.4
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 6.1e-128 461.8 468 53.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 6.1e-128 461.8 467 50.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.0e-127 461.1 471 51.8
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.4e-127 460.7 469 51.8
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.8e-127 460.3 471 52.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.8e-127 460.3 464 53.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 2.3e-127 459.9 471 52.4
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.3e-127 459.9 471 52.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 3.0e-127 459.5 472 52.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.0e-127 459.1 468 52.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.2e-127 458.8 468 51.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.8e-127 458.4 468 52.8
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 8.8e-127 458.0 466 52.6
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 8.8e-127 458.0 467 51.4
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.2e-126 457.6 467 52.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.5e-126 457.2 467 52.2
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.0e-126 456.8 467 53.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.0e-126 456.8 467 51.2
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.0e-126 456.8 469 52.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.6e-126 456.4 467 51.4
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.4e-126 455.7 464 51.3
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.4e-126 455.7 467 52.0
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 4.4e-126 455.7 470 50.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.4e-126 455.7 467 52.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.4e-126 455.7 467 52.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 5.7e-126 455.3 468 51.7
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 9.8e-126 454.5 470 52.3
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.8e-126 454.5 470 51.9
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.8e-126 454.5 471 51.8
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 9.8e-126 454.5 464 52.4
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.3e-125 454.1 466 51.9
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.3e-125 454.1 467 51.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.3e-125 454.1 467 51.8
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.7e-125 453.8 467 52.0
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.7e-125 453.8 464 53.0
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.7e-125 453.8 468 52.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.7e-125 453.8 465 51.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.8e-125 453.0 469 51.6
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-125 453.0 471 51.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 3.7e-125 452.6 467 51.8
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.7e-125 452.6 467 52.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.7e-125 452.6 471 51.6
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.7e-125 452.6 468 52.6
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.8e-125 452.2 482 51.2
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 6.3e-125 451.8 466 52.1
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.3e-125 451.8 467 53.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 8.3e-125 451.4 467 51.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.1e-124 451.1 467 52.2
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.4e-124 450.7 467 51.6
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-124 450.7 464 51.9
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-124 450.7 464 52.4
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.4e-124 450.7 465 51.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.1e-124 449.5 464 52.2
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.4e-124 448.7 471 51.6
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 7.0e-124 448.4 467 52.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 7.0e-124 448.4 467 52.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 9.1e-124 448.0 464 51.1
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-123 447.6 471 51.4
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 5.9e-123 445.3 486 49.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 7.7e-123 444.9 470 52.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.0e-122 444.5 467 52.2
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.7e-122 443.7 467 50.5
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.3e-122 443.4 464 50.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.8e-122 442.6 464 50.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 3.8e-122 442.6 428 55.6
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.8e-122 442.6 468 51.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 6.6e-122 441.8 466 50.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-121 441.0 465 51.4
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.1e-121 441.0 467 49.9
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.3e-121 439.5 469 50.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.8e-120 436.4 479 50.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.6e-120 436.0 467 50.5
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.6e-120 436.0 467 50.5
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 8.0e-120 434.9 467 50.3
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 8.0e-120 434.9 467 50.3
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 8.0e-120 434.9 466 50.2
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.0e-119 434.5 466 50.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.0e-119 434.5 468 49.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.8e-119 433.7 469 49.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.6e-118 429.9 467 51.4
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.4e-118 429.5 464 51.1
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.8e-117 426.4 503 47.1
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 8.3e-117 424.9 463 49.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.4e-116 423.3 467 49.0
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 5.9e-115 418.7 467 49.5
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.9e-115 418.7 483 48.0
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.0e-114 417.9 427 51.8
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.0e-114 415.6 469 48.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.9e-113 413.7 435 52.0
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.8e-112 409.8 464 47.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 6.1e-112 408.7 468 48.7
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.6e-110 403.3 466 47.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.4e-110 402.9 468 47.0
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.7e-109 399.4 435 49.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 6.4e-109 398.7 428 50.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.0e-107 393.7 468 47.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 7.8e-107 391.7 496 46.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 6.6e-106 388.7 545 43.5
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.5e-105 387.5 468 46.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 5.2e-103 379.0 413 50.4
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 5.2e-103 379.0 493 44.2
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.7e-101 372.9 392 52.0
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.9e-101 372.5 431 48.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.1e-98 362.5 468 45.3
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.2e-96 357.8 467 44.5
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.8e-96 356.7 434 46.8
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 6.8e-95 352.1 426 48.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.7e-91 340.1 577 37.6
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-80 303.5 322 50.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-79 301.2 452 42.3
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.0e-79 299.7 333 48.9
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 4.0e-79 299.7 338 48.8
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.3e-79 299.3 315 50.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.5e-78 297.7 342 48.2
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.2e-76 290.0 307 49.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 3.8e-61 240.0 205 66.8
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.8e-61 240.0 277 47.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-60 236.9 289 46.0
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 7.9e-59 232.3 277 44.4
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.1e-57 228.4 265 46.4
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 8.2e-56 222.2 478 32.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.2e-52 209.9 182 58.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.0e-50 203.8 205 53.7
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.3e-48 198.4 224 46.9
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.0e-46 191.0 237 47.3
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 7.2e-36 156.0 129 62.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-32 144.4 134 53.7
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 6.3e-32 142.9 135 56.3
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 8.2e-32 142.5 147 53.1
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-30 138.7 113 59.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 5.9e-30 136.3 128 57.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.1e-27 127.9 298 33.6
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.6e-25 120.9 113 54.0
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 5.7e-25 119.8 283 32.5
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.3e-24 118.6 130 44.6
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 9.1e-23 112.5 256 32.0
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-15 88.6 99 49.5
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 7.0e-15 86.3 65 70.8
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.7e-13 81.6 60 66.7
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.2e-13 81.3 65 58.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.2e-13 81.3 67 61.2
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.5e-12 78.6 65 56.9
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.9e-12 78.2 65 55.4
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.2e-12 77.4 73 52.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.7e-11 74.3 61 60.7
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 4.7e-11 73.6 69 53.6
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.8e-10 69.3 77 46.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.4e-09 67.0 62 56.5
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.8e-07 61.6 48 62.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 7.0e-07 59.7 51 58.8


User provided reference genes

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