Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 7.9e-221 770.4 461 100.0
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 8.9e-39 165.6 223 42.6
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.5e-38 164.9 225 43.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 3.7e-37 160.2 222 41.9
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 4.9e-37 159.8 224 42.0
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 8.3e-37 159.1 223 42.2
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.4e-36 158.3 224 41.1
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.4e-36 158.3 224 41.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.4e-36 158.3 223 41.7
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.4e-36 158.3 224 40.2
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.8e-36 157.9 224 42.9
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.4e-36 157.5 223 41.3
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.2e-36 157.1 224 41.5
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 5.4e-36 156.4 224 42.0
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.4e-36 156.4 224 40.2
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 5.4e-36 156.4 223 40.4
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 7.0e-36 156.0 178 45.5
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 7.0e-36 156.0 224 39.3
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 7.0e-36 156.0 224 40.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 9.2e-36 155.6 224 42.9
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.2e-35 155.2 224 39.7
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.2e-35 155.2 222 40.5
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.2e-35 155.2 226 40.3
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-35 154.8 227 40.1
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.6e-35 154.8 222 40.5
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.6e-35 154.8 224 41.1
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.6e-35 154.8 226 40.3
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.0e-35 154.5 223 39.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.0e-35 154.5 178 43.8
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.0e-35 154.5 223 39.9
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.7e-35 154.1 223 39.5
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.5e-35 153.7 223 42.2
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 3.5e-35 153.7 223 39.5
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 3.5e-35 153.7 223 39.5
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 3.5e-35 153.7 223 40.8
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 3.5e-35 153.7 223 41.3
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 4.6e-35 153.3 223 39.0
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 4.6e-35 153.3 230 39.6
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 4.6e-35 153.3 224 39.7
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 4.6e-35 153.3 224 42.0
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 4.6e-35 153.3 224 40.6
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 4.6e-35 153.3 224 39.7
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 5.9e-35 152.9 222 39.6
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 5.9e-35 152.9 224 41.5
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.0e-34 152.1 223 39.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.0e-34 152.1 224 39.7
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.0e-34 152.1 224 40.2
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.0e-34 152.1 176 43.8
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-34 151.8 177 43.5
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.3e-34 151.8 224 39.7
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.7e-34 151.4 223 42.2
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-34 151.4 222 37.8
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.3e-34 151.0 224 38.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.0e-34 150.6 223 38.6
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.0e-34 150.6 176 43.2
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.0e-34 150.6 197 42.6
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 3.9e-34 150.2 177 42.9
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.9e-34 150.2 225 40.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.9e-34 150.2 223 39.0
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 3.9e-34 150.2 227 41.4
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 5.0e-34 149.8 223 38.6
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 5.0e-34 149.8 223 42.6
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 5.0e-34 149.8 224 38.8
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 6.6e-34 149.4 205 41.0
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 6.6e-34 149.4 223 38.1
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 6.6e-34 149.4 223 40.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 6.6e-34 149.4 223 40.4
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 6.6e-34 149.4 223 41.3
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 8.6e-34 149.1 219 40.2
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 8.6e-34 149.1 223 38.6
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 8.6e-34 149.1 224 37.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.1e-33 148.7 223 39.0
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.1e-33 148.7 223 38.6
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.1e-33 148.7 224 38.8
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.5e-33 148.3 224 37.1
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.5e-33 148.3 197 42.1
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.5e-33 147.5 223 37.2
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.3e-33 147.1 224 39.3
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 4.3e-33 146.7 223 38.1
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.3e-33 146.7 223 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 5.6e-33 146.4 223 39.5
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 5.6e-33 146.4 228 37.7
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 5.6e-33 146.4 227 38.3
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 5.6e-33 146.4 202 39.6
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 7.3e-33 146.0 224 38.8
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 9.5e-33 145.6 223 37.7
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.5e-33 145.6 223 39.0
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 9.5e-33 145.6 224 38.8
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 9.5e-33 145.6 223 38.6
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.2e-32 145.2 224 38.8
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.2e-32 145.2 224 38.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-32 144.4 223 39.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.7e-32 143.3 179 42.5
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.7e-32 143.3 178 42.7
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.4e-31 141.7 214 42.1
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.3e-31 141.0 180 41.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.1e-31 140.6 223 37.7
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 5.2e-31 139.8 235 39.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 6.8e-31 139.4 140 45.7
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.2e-30 138.7 223 35.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-30 138.3 223 38.1
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.5e-30 138.3 226 38.5
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 4.4e-30 136.7 223 39.0
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 5.8e-30 136.3 223 35.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 9.8e-30 135.6 191 38.2
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.7e-29 133.7 221 35.3
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 2.4e-28 131.0 221 36.2
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.3e-26 124.4 177 39.5
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.3e-25 120.6 184 40.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.2e-24 118.6 177 35.0
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.8e-22 109.8 103 47.6
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 4.1e-20 103.6 268 32.1
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.1e-19 101.3 156 36.5
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 7.8e-19 99.4 246 29.3
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 3.0e-18 97.4 176 35.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 9.5e-17 92.4 98 43.9
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 2.4e-15 87.8 149 34.2
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 9.9e-14 82.4 232 31.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.3e-13 82.0 113 38.9
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.1e-12 77.0 149 33.6
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.7e-11 74.3 73 42.5
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.0e-10 72.4 63 49.2
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 2.3e-10 71.2 73 41.1
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 8.7e-10 69.3 76 38.2
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 8.7e-10 69.3 76 38.2
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.1e-09 68.9 167 27.5
MCO09G447 Micromonas commoda HOM05D005617 ORTHO05D006847 4.3e-09 67.0 227 30.0
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 9.6e-09 65.9 179 30.7
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-08 65.5 88 42.0
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.1e-07 62.4 77 39.0


User provided reference genes

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