Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 3.7e-190 668.3 410 100.0
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.4e-157 560.1 369 83.5
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 8.8e-22 109.0 199 30.7
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.1e-21 108.6 199 34.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.5e-21 107.5 132 43.9
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 5.7e-21 106.3 220 34.5
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 3.7e-20 103.6 204 36.3
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 2.4e-19 100.9 215 33.0
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 9.1e-19 99.0 223 31.8
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 9.1e-19 99.0 197 34.5
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 9.1e-19 99.0 139 38.1
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 9.1e-19 99.0 210 33.8
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.2e-18 98.6 216 31.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.5e-18 98.2 209 34.4
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 2.0e-18 97.8 229 32.8
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 2.6e-18 97.4 216 31.0
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 3.4e-18 97.1 205 33.2
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 3.4e-18 97.1 231 34.2
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 4.5e-18 96.7 214 34.1
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 4.5e-18 96.7 217 33.2
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 4.5e-18 96.7 211 32.7
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.9e-18 96.3 223 31.8
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 7.7e-18 95.9 206 31.1
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 7.7e-18 95.9 195 32.8
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 7.7e-18 95.9 216 33.8
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 1.0e-17 95.5 223 31.4
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.0e-17 95.5 223 31.4
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 1.0e-17 95.5 229 32.3
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.3e-17 95.1 198 33.8
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.3e-17 95.1 199 32.7
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 2.2e-17 94.4 201 30.8
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 2.2e-17 94.4 224 30.4
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.2e-17 94.4 191 34.0
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 2.9e-17 94.0 223 33.6
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.9e-17 94.0 192 34.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 2.9e-17 94.0 212 32.1
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 3.8e-17 93.6 225 29.3
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 5.0e-17 93.2 206 31.1
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 5.0e-17 93.2 188 34.0
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 6.5e-17 92.8 212 32.5
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 6.5e-17 92.8 214 31.3
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 8.5e-17 92.4 199 33.7
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 8.5e-17 92.4 216 30.1
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.1e-16 92.0 202 30.7
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.1e-16 92.0 203 32.0
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.4e-16 91.7 216 31.9
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.9e-16 91.3 220 30.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.9e-16 91.3 206 31.6
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 1.9e-16 91.3 206 31.6
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 2.5e-16 90.9 220 30.5
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 2.5e-16 90.9 221 29.4
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 2.5e-16 90.9 220 32.7
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 2.5e-16 90.9 210 31.0
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 3.2e-16 90.5 198 30.8
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 4.2e-16 90.1 209 31.6
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 4.2e-16 90.1 222 32.4
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 4.2e-16 90.1 196 32.1
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 5.5e-16 89.7 213 31.9
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 5.5e-16 89.7 218 32.6
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 5.5e-16 89.7 223 30.5
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 5.5e-16 89.7 200 30.5
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 5.5e-16 89.7 215 30.7
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 7.2e-16 89.4 216 29.6
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 7.2e-16 89.4 212 30.2
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 7.2e-16 89.4 216 29.6
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 7.2e-16 89.4 212 30.2
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 7.2e-16 89.4 213 30.5
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 7.2e-16 89.4 202 30.2
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 9.4e-16 89.0 213 31.5
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 9.4e-16 89.0 200 32.5
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 9.4e-16 89.0 213 31.5
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 9.4e-16 89.0 196 33.7
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 1.2e-15 88.6 211 30.3
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 1.2e-15 88.6 211 30.3
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 1.2e-15 88.6 195 33.3
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.2e-15 88.6 236 30.5
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 2.7e-15 87.4 210 30.5
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 2.7e-15 87.4 210 30.5
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.7e-15 87.4 193 30.1
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 2.7e-15 87.4 200 32.5
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 3.6e-15 87.0 228 30.3
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.7e-15 86.7 216 29.2
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 4.7e-15 86.7 214 29.9
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 4.7e-15 86.7 232 30.2
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 4.7e-15 86.7 199 31.7
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 6.1e-15 86.3 195 31.3
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 6.1e-15 86.3 209 30.6
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 6.1e-15 86.3 218 29.8
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 6.1e-15 86.3 217 31.3
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 6.1e-15 86.3 187 32.1
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 7.9e-15 85.9 205 30.7
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.0e-14 85.5 203 27.6
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.0e-14 85.5 143 39.2
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 1.4e-14 85.1 203 29.6
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 1.8e-14 84.7 223 29.1
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.8e-14 84.7 218 31.2
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.8e-14 84.7 203 29.6
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.3e-14 84.3 218 29.4
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 2.3e-14 84.3 190 33.2
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 5.1e-14 83.2 196 30.1
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 6.7e-14 82.8 203 28.6
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.7e-14 82.8 139 38.1
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.1e-13 82.0 199 30.2
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 6.3e-12 76.3 131 36.6
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 1.4e-11 75.1 217 29.0
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.4e-11 74.3 179 29.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 7.7e-10 69.3 186 29.0
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 3.8e-09 67.0 108 36.1
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.1e-08 65.5 139 29.5
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.5e-08 65.1 107 34.6
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 3.2e-08 63.9 126 29.4
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 4.2e-08 63.5 125 32.0
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 7.2e-08 62.8 107 34.6
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.2e-07 62.0 134 29.9
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.6e-07 61.6 44 56.8
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 2.1e-07 61.2 103 33.0
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 6.1e-07 59.7 47 51.1
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 8.0e-07 59.3 127 29.9
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.0e-06 57.4 109 30.3
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.2e-06 56.6 115 29.6
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 8.8e-06 55.8 129 28.7


User provided reference genes

Program Settings