Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 4.4e-127 458.0 236 100.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 8.3e-41 171.4 177 51.4
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.1e-40 171.0 155 54.8
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.1e-40 169.1 171 47.4
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 5.4e-40 168.7 151 53.0
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.0e-39 166.8 155 52.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 2.0e-39 166.8 157 51.0
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.7e-39 166.4 154 51.9
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.7e-39 166.4 170 50.6
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.5e-39 165.6 149 51.0
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 5.9e-39 165.2 155 50.3
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.9e-39 165.2 182 45.1
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.0e-38 164.5 151 54.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.3e-38 164.1 162 50.6
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.3e-38 164.1 154 51.3
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.7e-38 163.7 167 49.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.7e-38 163.7 151 52.3
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 2.3e-38 163.3 155 51.6
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 2.3e-38 163.3 157 49.7
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.3e-38 163.3 181 45.9
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.9e-38 162.9 155 51.0
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.8e-38 162.5 154 52.6
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.8e-38 162.5 162 50.6
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.8e-38 162.5 162 50.6
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 3.8e-38 162.5 157 51.0
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 3.8e-38 162.5 151 52.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 3.8e-38 162.5 154 50.6
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 5.0e-38 162.2 156 50.6
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 5.0e-38 162.2 176 45.5
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 5.0e-38 162.2 155 51.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.1e-37 161.0 151 51.7
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.1e-37 161.0 156 51.3
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.1e-37 161.0 151 51.0
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.1e-37 161.0 153 50.3
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.5e-37 160.6 159 49.7
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.9e-37 160.2 151 51.7
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.5e-37 159.8 151 51.7
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.5e-37 159.8 155 49.7
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 3.3e-37 159.5 155 47.7
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.3e-37 159.5 155 48.4
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 4.3e-37 159.1 154 49.4
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.3e-37 159.1 168 45.8
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 4.3e-37 159.1 158 50.0
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.6e-37 158.7 162 50.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 5.6e-37 158.7 155 49.7
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 5.6e-37 158.7 172 44.8
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 7.2e-37 158.3 154 49.4
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.2e-37 158.3 150 49.3
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 7.2e-37 158.3 155 51.0
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 7.2e-37 158.3 158 48.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 7.2e-37 158.3 170 50.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 9.5e-37 157.9 155 49.0
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 9.5e-37 157.9 150 48.7
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 9.5e-37 157.9 150 48.7
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.2e-36 157.5 158 49.4
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.6e-36 157.1 154 50.6
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.6e-36 157.1 155 49.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.1e-36 156.8 157 48.4
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 3.6e-36 156.0 157 47.1
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.7e-36 155.6 151 51.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.7e-36 155.6 157 47.8
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 4.7e-36 155.6 168 43.5
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 4.7e-36 155.6 142 53.5
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 4.7e-36 155.6 174 44.8
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.1e-36 155.2 152 47.4
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 6.1e-36 155.2 166 48.2
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.1e-36 155.2 151 51.0
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 6.1e-36 155.2 154 50.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 8.0e-36 154.8 155 48.4
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-35 154.5 151 51.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.0e-35 154.5 151 51.0
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.0e-35 154.5 171 47.4
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.4e-35 154.1 151 51.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-35 153.7 175 48.0
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-35 153.7 151 51.0
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.8e-35 153.7 151 51.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.8e-35 153.7 151 51.0
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.8e-35 153.7 151 47.7
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.8e-35 153.7 166 47.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.8e-35 153.7 151 51.0
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.8e-35 153.7 164 46.3
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.8e-35 153.7 194 41.8
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.3e-35 153.3 151 51.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.0e-35 152.9 159 49.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 3.0e-35 152.9 162 45.7
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 4.0e-35 152.5 149 51.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 5.2e-35 152.1 164 45.1
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 6.8e-35 151.8 159 47.8
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 6.8e-35 151.8 182 42.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 8.9e-35 151.4 181 46.4
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.2e-34 151.0 170 45.3
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.2e-34 151.0 155 45.8
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.5e-34 150.6 191 40.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 2.6e-34 149.8 151 49.7
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.6e-34 149.8 151 46.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.4e-34 149.4 151 45.7
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 4.4e-34 149.1 155 45.8
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 4.4e-34 149.1 162 46.9
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 5.7e-34 148.7 149 50.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.7e-34 148.7 166 45.2
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.5e-34 148.3 166 47.0
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 9.8e-34 147.9 166 45.2
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 9.8e-34 147.9 155 48.4
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.3e-33 147.5 162 48.1
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.7e-33 147.1 165 46.1
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.7e-33 147.1 166 45.8
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.7e-33 147.1 155 46.5
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.2e-33 146.7 176 46.0
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.2e-33 146.7 176 46.0
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.9e-33 146.4 176 46.0
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.9e-33 146.4 176 46.0
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.9e-33 146.4 151 45.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 4.9e-33 145.6 151 47.7
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 6.4e-33 145.2 168 45.2
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.4e-33 145.2 151 48.3
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.4e-33 145.2 174 45.4
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 6.4e-33 145.2 151 47.7
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-32 144.4 165 45.5
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.1e-32 144.4 151 47.0
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.8e-32 143.7 176 42.0
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.8e-32 143.7 162 47.5
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.4e-32 143.3 161 43.5
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 3.2e-32 142.9 155 44.5
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 9.2e-32 141.4 179 41.9
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 9.2e-32 141.4 151 43.7
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 4.6e-31 139.0 166 43.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.0e-30 137.9 136 51.5
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.3e-30 137.5 136 50.7
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.3e-30 136.7 158 44.9
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 3.0e-30 136.3 169 43.8
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 3.9e-30 136.0 127 54.3
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 9.5e-29 131.3 123 51.2
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 9.5e-29 131.3 126 50.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.2e-28 131.0 122 53.3
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 4.7e-28 129.0 194 38.7
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 4.7e-28 129.0 124 50.0
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 4.7e-28 129.0 230 35.7
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.0e-27 127.9 150 46.0
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.8e-27 127.1 126 48.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.2e-26 124.4 120 50.8
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.4e-26 122.9 199 37.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.4e-26 122.9 120 50.0
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 4.4e-26 122.5 144 45.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 5.8e-26 122.1 120 49.2
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 9.8e-26 121.3 187 38.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.2e-23 114.4 124 44.4
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 2.5e-21 106.7 86 58.1
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 3.3e-21 106.3 100 50.0
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.1e-20 103.6 123 45.5
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 6.2e-20 102.1 149 40.3
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.4e-19 100.9 113 43.4
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 8.9e-19 98.2 113 45.1
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.5e-18 97.4 131 39.7
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.5e-18 97.4 104 48.1
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.2e-15 87.8 88 48.9
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 6.2e-12 75.5 91 39.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.3e-11 73.6 87 39.1
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.2e-11 72.4 154 27.9
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.9e-08 63.9 49 53.1
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 2.4e-08 63.5 89 38.2


User provided reference genes

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