Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g60144 Chara braunii HOM05D002561 ORTHO05D008175 3.6e-56 221.5 122 100.0
Pp3c26_340 Physcomitrium patens HOM05D002561 ORTHO05D008175 1.2e-22 110.2 99 57.6
Mapoly0064s0088 Marchantia polymorpha HOM05D002561 ORTHO05D008175 5.8e-22 107.8 99 55.6
FvH4_2g39280 Fragaria vesca HOM05D002561 ORTHO05D008175 3.2e-20 102.1 99 48.5
PGR031G3600 Punica granatum HOM05D002561 ORTHO05D008175 4.2e-20 101.7 99 51.5
SalBow8G2957 Salvia bowleyana HOM05D002561 ORTHO05D008175 4.2e-20 101.7 99 51.5
SalBow8G4848 Salvia bowleyana HOM05D002561 ORTHO05D008175 4.2e-20 101.7 99 51.5
FAN27G3197 Fragaria x ananassa HOM05D002561 ORTHO05D008175 7.1e-20 100.9 99 47.5
Lj4A33G81 Lonicera japonica HOM05D002561 ORTHO05D008175 1.6e-19 99.8 99 50.5
Aqoxy5G01541 Aquilegia oxysepala HOM05D002561 ORTHO05D008175 2.1e-19 99.4 99 45.5
GSVIVG01009778001 Vitis vinifera HOM05D002561 ORTHO05D008175 2.7e-19 99.0 99 48.5
RcHm_v2.0_Chr6g0301721 Rosa chinensis HOM05D002561 ORTHO05D008175 3.5e-19 98.6 99 46.5
DCAR_017516 Daucus carota HOM05D002561 ORTHO05D008175 6.0e-19 97.8 99 49.5
SMO364G0133 Selaginella moellendorffii HOM05D002561 ORTHO05D008175 6.0e-19 97.8 99 53.5
TWI56G0768 Tripterygium wilfordii HOM05D002561 ORTHO05D008175 6.0e-19 97.8 99 48.5
Os11g0592700 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D008175 7.9e-19 97.4 97 51.5
CANSAT25G1258 Cannabis sativa HOM05D002561 ORTHO05D008175 1.0e-18 97.1 99 48.5
Eucgr.F01859 Eucalyptus grandis HOM05D002561 ORTHO05D008175 1.0e-18 97.1 99 46.5
Ciclev10000772m.g Citrus clementina HOM05D002561 ORTHO05D008175 1.7e-18 96.3 99 46.5
Peaxi162Scf00189g00816 Petunia axillaris HOM05D002561 ORTHO05D008175 1.7e-18 96.3 99 47.5
Migut.N03115 Erythranthe guttata HOM05D002561 ORTHO05D008175 2.3e-18 95.9 99 47.5
Atru.chr13.400 Acer truncatum HOM05D002561 ORTHO05D008175 3.0e-18 95.5 99 45.5
Duzib093G1612 Durio zibethinus HOM05D002561 ORTHO05D008175 3.0e-18 95.5 99 46.5
MD15G1022100 Malus domestica HOM05D002561 ORTHO05D008175 3.9e-18 95.1 99 45.5
Nn5g29715 Nelumbo nucifera HOM05D002561 ORTHO05D008175 3.9e-18 95.1 99 45.5
CsaV3_3G045490 Cucumis sativus L. HOM05D002561 ORTHO05D008175 5.1e-18 94.7 99 45.5
Prupe.1G373900 Prunus persica HOM05D002561 ORTHO05D008175 5.1e-18 94.7 99 46.5
Cc10_g02420 Coffea canephora HOM05D002561 ORTHO05D008175 6.6e-18 94.4 99 46.5
AUR62014473 Chenopodium quinoa HOM05D002561 ORTHO05D008175 8.7e-18 94.0 99 43.4
ClCG05G018690 Citrullus lanatus HOM05D002561 ORTHO05D008175 8.7e-18 94.0 99 46.5
Gohir.A05G190200 Gossypium hirsutum HOM05D002561 ORTHO05D008175 8.7e-18 94.0 99 46.5
Gorai.009G198600 Gossypium raimondii HOM05D002561 ORTHO05D008175 8.7e-18 94.0 99 46.5
QL02p010149 Quercus lobata HOM05D002561 ORTHO05D008175 8.7e-18 94.0 99 46.5
CiPaw.08G060900 Carya illinoinensis HOM05D002561 ORTHO05D008175 1.1e-17 93.6 99 46.5
Thhalv10013185m.g Eutrema salsugineum HOM05D002561 ORTHO05D008175 1.1e-17 93.6 99 44.4
PSO731G0115 Papaver somniferum HOM05D002561 ORTHO05D008175 1.1e-17 93.6 99 44.4
Potri.002G031100 Populus trichocarpa HOM05D002561 ORTHO05D008175 1.1e-17 93.6 99 44.4
FAN26G2864 Fragaria x ananassa HOM05D002561 ORTHO05D008175 1.5e-17 93.2 106 44.3
Gohir.D05G193600 Gossypium hirsutum HOM05D002561 ORTHO05D008175 1.5e-17 93.2 99 46.5
PSO764G0318 Papaver somniferum HOM05D002561 ORTHO05D008175 1.5e-17 93.2 99 44.4
Sabra02G0024900 Salix brachista HOM05D002561 ORTHO05D008175 1.5e-17 93.2 99 44.4
Sed0027585 Sechium edule HOM05D002561 ORTHO05D008175 1.5e-17 93.2 99 46.5
unitig_22.g6786 Utricularia gibba HOM05D002561 ORTHO05D008175 1.5e-17 93.2 99 46.5
CSS0039568 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 1.9e-17 92.8 99 45.5
Nitab4.5_0013623g0010 Nicotiana tabacum HOM05D002561 ORTHO05D008175 1.9e-17 92.8 99 46.5
AL8G34040 Arabidopsis lyrata HOM05D002561 ORTHO05D008175 2.5e-17 92.4 99 44.4
Carub.0008s1849 Capsella rubella HOM05D002561 ORTHO05D008175 2.5e-17 92.4 99 44.4
Nitab4.5_0001861g0050 Nicotiana tabacum HOM05D002561 ORTHO05D008175 2.5e-17 92.4 99 46.5
Rhsim06G0028500 Rhododendron simsii HOM05D002561 ORTHO05D008175 2.5e-17 92.4 100 47.0
PGSC0003DMG400003749 Solanum tuberosum HOM05D002561 ORTHO05D008175 2.5e-17 92.4 99 46.5
Aa31sc143G30 Aethionema arabicum HOM05D002561 ORTHO05D008175 3.3e-17 92.0 99 44.4
Sp6g19630 Schrenkiella parvula HOM05D002561 ORTHO05D008175 3.3e-17 92.0 99 43.4
Solyc04g080770.3 Solanum lycopersicum HOM05D002561 ORTHO05D008175 3.3e-17 92.0 99 46.5
Sopen04g034360 Solanum pennellii HOM05D002561 ORTHO05D008175 3.3e-17 92.0 99 46.5
AUR62034526 Chenopodium quinoa HOM05D002561 ORTHO05D008175 4.3e-17 91.7 99 42.4
Lj5g0007882 Lotus japonicus HOM05D002561 ORTHO05D008175 4.3e-17 91.7 106 41.5
EL10Ac1g00604 Beta vulgaris HOM05D002561 ORTHO05D008175 5.6e-17 91.3 99 41.4
HanXRQChr05g0151221 Helianthus annuus HOM05D002561 ORTHO05D008175 5.6e-17 91.3 99 44.4
MBI05_g12583_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D008175 5.6e-17 91.3 100 43.0
Medtr1g022980 Medicago truncatula HOM05D002561 ORTHO05D008175 5.6e-17 91.3 99 44.4
BraA02t05881Z Brassica rapa HOM05D002561 ORTHO05D008175 7.3e-17 90.9 99 44.4
COL.COLO4_26238 Corchorus olitorius HOM05D002561 ORTHO05D008175 7.3e-17 90.9 99 44.4
TPR.G30486 Trifolium pratense HOM05D002561 ORTHO05D008175 7.3e-17 90.9 99 44.4
Cpa.g.sc140.3 Carica papaya HOM05D002561 ORTHO05D008175 9.6e-17 90.5 98 44.9
Psat6g009920 Pisum sativum HOM05D002561 ORTHO05D008175 9.6e-17 90.5 99 43.4
TAR381G1262 Trochodendron aralioides HOM05D002561 ORTHO05D008175 9.6e-17 90.5 99 44.4
arahy.Tifrunner.gnm1.ann1.M2UU0S Arachis hypogaea HOM05D002561 ORTHO05D008175 1.3e-16 90.1 99 43.4
Glyma.17G253900 Glycine max HOM05D002561 ORTHO05D008175 1.3e-16 90.1 99 43.4
AT5G57960 Arabidopsis thaliana HOM05D002561 ORTHO05D008175 1.6e-16 89.7 99 42.4
A02p08080 Brassica napus HOM05D002561 ORTHO05D008175 1.6e-16 89.7 99 43.4
BcaB05g22389 Brassica carinata HOM05D002561 ORTHO05D008175 2.1e-16 89.4 99 42.4
C02p13730 Brassica napus HOM05D002561 ORTHO05D008175 2.1e-16 89.4 99 42.4
BolC2t07491H Brassica oleracea HOM05D002561 ORTHO05D008175 2.1e-16 89.4 99 42.4
CARHR271740 Cardamine hirsuta HOM05D002561 ORTHO05D008175 2.1e-16 89.4 99 43.4
Phvul.001G011200 Phaseolus vulgaris HOM05D002561 ORTHO05D008175 2.1e-16 89.4 99 42.4
HPP92_013175 Vanilla planifolia HOM05D002561 ORTHO05D008175 2.8e-16 89.0 84 47.6
arahy.Tifrunner.gnm1.ann1.1U19Q5 Arachis hypogaea HOM05D002561 ORTHO05D008175 4.8e-16 88.2 99 42.4
Lsat_1_v5_gn_5_26741 Lactuca sativa HOM05D002561 ORTHO05D008175 4.8e-16 88.2 109 41.3
Manes.05G154700 Manihot esculenta HOM05D002561 ORTHO05D008175 4.8e-16 88.2 99 43.4
VMungo0647G1104 Vigna mungo HOM05D002561 ORTHO05D008175 8.1e-16 87.4 99 41.4
ATR0665G429 Amborella trichopoda HOM05D002561 ORTHO05D008175 1.4e-15 86.7 99 37.4
Hma1.2p1_0469F.1_g158890 Hydrangea macrophylla HOM05D002561 ORTHO05D008175 2.4e-15 85.9 100 44.0
Actinidia15362 Actinidia chinensis HOM05D002561 ORTHO05D008175 5.3e-15 84.7 99 45.5
Lalb_Chr14g0369561 Lupinus albus HOM05D002561 ORTHO05D008175 1.7e-13 79.7 99 40.4
FAN15G1503 Fragaria x ananassa HOM05D002561 ORTHO05D008175 1.9e-12 76.3 71 47.9
FAN20G1367 Fragaria x ananassa HOM05D002561 ORTHO05D008175 7.1e-12 74.3 71 46.5
CDE06G0545 Ceratophyllum demersum HOM05D002561 ORTHO05D008175 9.3e-12 73.9 99 37.4
PRCOL_00004156 Prasinoderma coloniale HOM05D002561 ORTHO05D008175 9.3e-12 73.9 98 36.7
SGA_v2.0_scaffold162G37906 Striga asiatica HOM05D002561 ORTHO05D008175 1.6e-11 73.2 71 50.7
Cfa013881 Carpinus fangiana HOM05D002561 ORTHO05D008175 1.3e-10 70.1 71 47.9
CAN.G851.43 Capsicum annuum HOM05D002561 ORTHO05D008175 5.1e-10 68.2 71 45.1
Cre16.g665650 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D008175 5.1e-10 68.2 95 35.8
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 1.9e-09 66.2 71 45.1
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 1.9e-09 66.2 71 45.1
arahy.Tifrunner.gnm1.ann1.NIBJ6A Arachis hypogaea HOM05D002561 ORTHO05D008175 7.4e-09 64.3 122 30.3
MCO16G051 Micromonas commoda HOM05D002561 ORTHO05D008175 1.1e-07 60.5 88 39.8
Haze_22559 Corylus avellana HOM05D002561 ORTHO05D008175 1.8e-07 59.7 77 42.9


User provided reference genes

Program Settings