Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g58399 Chara braunii HOM05D002860 ORTHO05D003123 0.0e+00 1221.1 678 100.0
Aqoxy2G00083 Aquilegia oxysepala HOM05D002860 ORTHO05D003123 9.4e-21 106.3 117 44.4
PGR004G1986 Punica granatum HOM05D002860 ORTHO05D003123 8.0e-20 103.2 117 44.4
Prupe.7G076000 Prunus persica HOM05D002860 ORTHO05D003123 3.9e-19 100.9 118 44.9
Nn2g15654 Nelumbo nucifera HOM05D002860 ORTHO05D003123 5.2e-19 100.5 117 44.4
Os08g0510800 Oryza sativa ssp. japonica HOM05D002860 ORTHO05D003123 8.8e-19 99.8 121 43.0
RcHm_v2.0_Chr3g0479871 Rosa chinensis HOM05D002860 ORTHO05D003123 8.8e-19 99.8 118 44.9
Haze_19976 Corylus avellana HOM05D002860 ORTHO05D003123 1.1e-18 99.4 117 41.9
Nn7g36020 Nelumbo nucifera HOM05D002860 ORTHO05D003123 1.1e-18 99.4 163 36.2
Lj5g0001504 Lotus japonicus HOM05D002860 ORTHO05D003123 1.5e-18 99.0 117 42.7
Phvul.007G259100 Phaseolus vulgaris HOM05D002860 ORTHO05D003123 2.0e-18 98.6 117 44.4
Sc25g0005080 Simmondsia chinensis HOM05D002860 ORTHO05D003123 2.0e-18 98.6 148 39.2
Cfa020178 Carpinus fangiana HOM05D002860 ORTHO05D003123 2.6e-18 98.2 117 41.0
Ciclev10012101m.g Citrus clementina HOM05D002860 ORTHO05D003123 3.3e-18 97.8 117 44.4
QL07p023492 Quercus lobata HOM05D002860 ORTHO05D003123 3.3e-18 97.8 117 42.7
Sabra06G0146800 Salix brachista HOM05D002860 ORTHO05D003123 3.3e-18 97.8 124 40.3
SMO134G0195 Selaginella moellendorffii HOM05D002860 ORTHO05D003123 3.3e-18 97.8 180 32.8
Lsat_1_v5_gn_5_163060 Lactuca sativa HOM05D002860 ORTHO05D003123 4.4e-18 97.4 118 45.8
Mapoly0061s0112 Marchantia polymorpha HOM05D002860 ORTHO05D003123 4.4e-18 97.4 115 41.7
BcaB02g08284 Brassica carinata HOM05D002860 ORTHO05D003123 5.7e-18 97.1 122 44.3
CiPaw.09G031000 Carya illinoinensis HOM05D002860 ORTHO05D003123 5.7e-18 97.1 145 39.3
MD14G1058800 Malus domestica HOM05D002860 ORTHO05D003123 5.7e-18 97.1 118 43.2
GSVIVG01033512001 Vitis vinifera HOM05D002860 ORTHO05D003123 5.7e-18 97.1 117 45.3
CSS0014167 Camellia sinensis var. sinensis HOM05D002860 ORTHO05D003123 7.4e-18 96.7 117 42.7
CANSAT64G0384 Cannabis sativa HOM05D002860 ORTHO05D003123 7.4e-18 96.7 117 42.7
CARHR168310 Cardamine hirsuta HOM05D002860 ORTHO05D003123 7.4e-18 96.7 117 45.3
Gohir.D04G098300 Gossypium hirsutum HOM05D002860 ORTHO05D003123 7.4e-18 96.7 117 43.6
Gorai.006G066800 Gossypium raimondii HOM05D002860 ORTHO05D003123 7.4e-18 96.7 117 43.6
Zm00001eb316810 Zea mays HOM05D002860 ORTHO05D003123 7.4e-18 96.7 117 40.2
ClCG04G002270 Citrullus lanatus HOM05D002860 ORTHO05D003123 9.7e-18 96.3 117 41.0
Manes.04G138500 Manihot esculenta HOM05D002860 ORTHO05D003123 9.7e-18 96.3 117 43.6
Thhalv10006049m.g Eutrema salsugineum HOM05D002860 ORTHO05D003123 1.3e-17 95.9 118 44.1
Glyma.02G174300 Glycine max HOM05D002860 ORTHO05D003123 1.3e-17 95.9 117 43.6
VMungo0720G2237 Vigna mungo HOM05D002860 ORTHO05D003123 1.3e-17 95.9 117 42.7
Aa31LG1G24080 Aethionema arabicum HOM05D002860 ORTHO05D003123 1.7e-17 95.5 117 44.4
AL5G39640 Arabidopsis lyrata HOM05D002860 ORTHO05D003123 1.7e-17 95.5 178 36.5
BraA04t16005Z Brassica rapa HOM05D002860 ORTHO05D003123 1.7e-17 95.5 175 36.0
BolC8t50951H Brassica oleracea HOM05D002860 ORTHO05D003123 2.2e-17 95.1 136 40.4
Duzib093G1712 Durio zibethinus HOM05D002860 ORTHO05D003123 2.2e-17 95.1 117 42.7
Thecc.05G170400 Theobroma cacao HOM05D002860 ORTHO05D003123 2.2e-17 95.1 117 42.7
TAR623G0275 Trochodendron aralioides HOM05D002860 ORTHO05D003123 2.2e-17 95.1 117 41.0
Zm00001eb101950 Zea mays HOM05D002860 ORTHO05D003123 2.2e-17 95.1 117 39.3
Atru.chr8.1087 Acer truncatum HOM05D002860 ORTHO05D003123 2.8e-17 94.7 117 40.2
BcaC07g40169 Brassica carinata HOM05D002860 ORTHO05D003123 2.8e-17 94.7 118 43.2
A04p02810 Brassica napus HOM05D002860 ORTHO05D003123 2.8e-17 94.7 175 36.0
THA.LOC104824470 Tarenaya hassleriana HOM05D002860 ORTHO05D003123 2.8e-17 94.7 146 40.4
Duzib106G0036 Durio zibethinus HOM05D002860 ORTHO05D003123 3.7e-17 94.4 117 42.7
ECA248G1415 Erigeron canadensis HOM05D002860 ORTHO05D003123 3.7e-17 94.4 120 42.5
Gohir.A04G048700 Gossypium hirsutum HOM05D002860 ORTHO05D003123 3.7e-17 94.4 147 38.8
HanXRQChr13g0390301 Helianthus annuus HOM05D002860 ORTHO05D003123 4.8e-17 94.0 140 37.1
Potri.006G191800 Populus trichocarpa HOM05D002860 ORTHO05D003123 4.8e-17 94.0 156 39.1
C08p33560 Brassica napus HOM05D002860 ORTHO05D003123 6.3e-17 93.6 136 40.4
Cpa.g.sc85.75 Carica papaya HOM05D002860 ORTHO05D003123 6.3e-17 93.6 155 38.7
Carub.0005s2483 Capsella rubella HOM05D002860 ORTHO05D003123 8.2e-17 93.2 180 36.7
Eucgr.A02447 Eucalyptus grandis HOM05D002860 ORTHO05D003123 8.2e-17 93.2 117 39.3
Glyma.09G112400 Glycine max HOM05D002860 ORTHO05D003123 8.2e-17 93.2 117 41.0
SGA_v2.0_scaffold274G46479 Striga asiatica HOM05D002860 ORTHO05D003123 8.2e-17 93.2 117 44.4
TWI74G1238 Tripterygium wilfordii HOM05D002860 ORTHO05D003123 8.2e-17 93.2 118 44.9
AT3G57990 Arabidopsis thaliana HOM05D002860 ORTHO05D003123 1.1e-16 92.8 182 37.4
A09p50810 Brassica napus HOM05D002860 ORTHO05D003123 1.1e-16 92.8 168 37.5
BraA09t40528Z Brassica rapa HOM05D002860 ORTHO05D003123 1.1e-16 92.8 168 37.5
Cc06_g16030 Coffea canephora HOM05D002860 ORTHO05D003123 1.1e-16 92.8 119 43.7
Lalb_Chr16g0383041 Lupinus albus HOM05D002860 ORTHO05D003123 1.1e-16 92.8 121 41.3
MBI01_g01348_MAGBIO Magnolia biondii HOM05D002860 ORTHO05D003123 1.1e-16 92.8 117 41.0
SEGI_35073 Sequoiadendron giganteum HOM05D002860 ORTHO05D003123 1.1e-16 92.8 117 39.3
Aa31LG10G12700 Aethionema arabicum HOM05D002860 ORTHO05D003123 1.4e-16 92.4 178 36.5
EL10Ac3g06927 Beta vulgaris HOM05D002860 ORTHO05D003123 1.4e-16 92.4 122 41.0
Dinv14286 Davidia involucrata HOM05D002860 ORTHO05D003123 1.4e-16 92.4 117 39.3
MD12G1059200 Malus domestica HOM05D002860 ORTHO05D003123 1.4e-16 92.4 118 41.5
Sabra16G0050800 Salix brachista HOM05D002860 ORTHO05D003123 1.4e-16 92.4 169 36.7
Sp5g04730 Schrenkiella parvula HOM05D002860 ORTHO05D003123 1.4e-16 92.4 180 36.7
AUR62024309 Chenopodium quinoa HOM05D002860 ORTHO05D003123 1.8e-16 92.0 120 40.8
SGA_v2.0_scaffold94G28421 Striga asiatica HOM05D002860 ORTHO05D003123 1.8e-16 92.0 117 45.3
THA.LOC104802510 Tarenaya hassleriana HOM05D002860 ORTHO05D003123 1.8e-16 92.0 146 39.0
TAR369G0455 Trochodendron aralioides HOM05D002860 ORTHO05D003123 1.8e-16 92.0 117 41.0
Ah.04g152420 Amaranthus hybridus HOM05D002860 ORTHO05D003123 2.4e-16 91.7 122 40.2
BcaC02g09976 Brassica carinata HOM05D002860 ORTHO05D003123 2.4e-16 91.7 177 35.6
BcaC02g09979 Brassica carinata HOM05D002860 ORTHO05D003123 2.4e-16 91.7 177 35.6
C04p34400 Brassica napus HOM05D002860 ORTHO05D003123 2.4e-16 91.7 177 35.6
BolC4t25002H Brassica oleracea HOM05D002860 ORTHO05D003123 2.4e-16 91.7 177 35.6
Gorai.006G104300 Gossypium raimondii HOM05D002860 ORTHO05D003123 2.4e-16 91.7 117 41.9
Manes.11G028000 Manihot esculenta HOM05D002860 ORTHO05D003123 3.1e-16 91.3 117 41.0
ATR0605G156 Amborella trichopoda HOM05D002860 ORTHO05D003123 4.1e-16 90.9 115 37.4
Gohir.A09G088000 Gossypium hirsutum HOM05D002860 ORTHO05D003123 4.1e-16 90.9 117 41.9
Gohir.D09G087800 Gossypium hirsutum HOM05D002860 ORTHO05D003123 4.1e-16 90.9 117 41.0
CsaV3_4G030390 Cucumis sativus L. HOM05D002860 ORTHO05D003123 5.3e-16 90.5 117 37.6
Pp3c4_23000 Physcomitrium patens HOM05D002860 ORTHO05D003123 5.3e-16 90.5 178 32.6
SalBow1G7211 Salvia bowleyana HOM05D002860 ORTHO05D003123 5.3e-16 90.5 117 42.7
HPP92_019677 Vanilla planifolia HOM05D002860 ORTHO05D003123 5.3e-16 90.5 119 41.2
Solyc10g080470.1 Solanum lycopersicum HOM05D002860 ORTHO05D003123 7.0e-16 90.1 117 41.9
PGSC0003DMG400023673 Solanum tuberosum HOM05D002860 ORTHO05D003123 7.0e-16 90.1 117 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3158 Anthoceros agrestis HOM05D002860 ORTHO05D003123 9.1e-16 89.7 416 28.4
BcaNung05751 Brassica carinata HOM05D002860 ORTHO05D003123 9.1e-16 89.7 168 36.9
MELO3C008898.2 Cucumis melo HOM05D002860 ORTHO05D003123 9.1e-16 89.7 117 37.6
Sed0000795 Sechium edule HOM05D002860 ORTHO05D003123 9.1e-16 89.7 116 38.8
FvH4_6g22460 Fragaria vesca HOM05D002860 ORTHO05D003123 1.2e-15 89.4 117 41.9
FAN02G0218 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.2e-15 89.4 117 41.9
FAN05G0251 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.2e-15 89.4 117 41.9
FAN05G0768 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.2e-15 89.4 117 41.9
FAN14G2855 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.2e-15 89.4 117 41.9
Medtr1g053910 Medicago truncatula HOM05D002860 ORTHO05D003123 1.6e-15 89.0 122 39.3
FAN09G4377 Fragaria x ananassa HOM05D002860 ORTHO05D003123 2.0e-15 88.6 117 41.0
Nitab4.5_0003600g0050 Nicotiana tabacum HOM05D002860 ORTHO05D003123 2.0e-15 88.6 117 39.3
Nitab4.5_0004991g0010 Nicotiana tabacum HOM05D002860 ORTHO05D003123 2.0e-15 88.6 117 39.3
MSTRG.26086 Avicennia marina HOM05D002860 ORTHO05D003123 2.6e-15 88.2 117 41.9
Os09g0491676 Oryza sativa ssp. japonica HOM05D002860 ORTHO05D003123 3.5e-15 87.8 124 38.7
Psat4g106560 Pisum sativum HOM05D002860 ORTHO05D003123 3.5e-15 87.8 121 38.8
Psat6g129520 Pisum sativum HOM05D002860 ORTHO05D003123 3.5e-15 87.8 121 38.8
Sopen10g031010 Solanum pennellii HOM05D002860 ORTHO05D003123 3.5e-15 87.8 117 40.2
Lalb_Chr05g0217951 Lupinus albus HOM05D002860 ORTHO05D003123 4.5e-15 87.4 121 40.5
TPR.G17612 Trifolium pratense HOM05D002860 ORTHO05D003123 4.5e-15 87.4 121 38.8
CAN.G128.37 Capsicum annuum HOM05D002860 ORTHO05D003123 5.9e-15 87.0 118 42.4
Ca_25704_v3 Cicer arietinum L. HOM05D002860 ORTHO05D003123 5.9e-15 87.0 209 31.1
DCAR_019842 Daucus carota HOM05D002860 ORTHO05D003123 7.7e-15 86.7 117 40.2
Potri.016G046900 Populus trichocarpa HOM05D002860 ORTHO05D003123 7.7e-15 86.7 154 37.0
Migut.K00039 Erythranthe guttata HOM05D002860 ORTHO05D003123 1.0e-14 86.3 117 41.0
CARHR137210 Cardamine hirsuta HOM05D002860 ORTHO05D003123 1.7e-14 85.5 145 35.2
Oeu007769.1 Olea europaea HOM05D002860 ORTHO05D003123 5.0e-14 84.0 117 40.2
Dinv24084 Davidia involucrata HOM05D002860 ORTHO05D003123 8.5e-14 83.2 118 39.0
MSTRG.10840 Avicennia marina HOM05D002860 ORTHO05D003123 1.5e-13 82.4 117 39.3
Carub.0004s2449 Capsella rubella HOM05D002860 ORTHO05D003123 2.5e-13 81.6 179 32.4
PGSC0003DMG400006313 Solanum tuberosum HOM05D002860 ORTHO05D003123 7.2e-13 80.1 120 35.8
Actinidia22029 Actinidia chinensis HOM05D002860 ORTHO05D003123 9.4e-13 79.7 156 33.3
Dinv43930 Davidia involucrata HOM05D002860 ORTHO05D003123 1.2e-12 79.3 117 35.0
Nn6g33644 Nelumbo nucifera HOM05D002860 ORTHO05D003123 1.6e-12 79.0 127 36.2
Rhsim03G0007100 Rhododendron simsii HOM05D002860 ORTHO05D003123 4.7e-12 77.4 179 30.7
vmacro07924 Vaccinium macrocarpon HOM05D002860 ORTHO05D003123 6.1e-12 77.0 119 35.3
Hma1.2p1_0183F.1_g080830 Hydrangea macrophylla HOM05D002860 ORTHO05D003123 8.0e-12 76.6 187 26.7
AUR62024310 Chenopodium quinoa HOM05D002860 ORTHO05D003123 1.8e-11 75.5 120 39.2
TAR636G2618 Trochodendron aralioides HOM05D002860 ORTHO05D003123 2.3e-11 75.1 122 35.2
CsaV3_3G032440 Cucumis sativus L. HOM05D002860 ORTHO05D003123 3.0e-11 74.7 117 32.5
ATR0049G071 Amborella trichopoda HOM05D002860 ORTHO05D003123 6.7e-11 73.6 160 28.8
Actinidia40434 Actinidia chinensis HOM05D002860 ORTHO05D003123 8.8e-11 73.2 217 28.6
PSO541G0690 Papaver somniferum HOM05D002860 ORTHO05D003123 1.2e-10 72.8 119 34.5
Pp3c26_2720 Physcomitrium patens HOM05D002860 ORTHO05D003123 1.2e-10 72.8 402 27.1
EL10Ac5g12150 Beta vulgaris HOM05D002860 ORTHO05D003123 2.0e-10 72.0 205 31.2
PSO675G2471 Papaver somniferum HOM05D002860 ORTHO05D003123 2.6e-10 71.6 109 36.7
MELO3C023944.2 Cucumis melo HOM05D002860 ORTHO05D003123 4.8e-09 67.4 117 31.6
Ah.07g200200 Amaranthus hybridus HOM05D002860 ORTHO05D003123 6.3e-09 67.0 207 30.0
unitig_26.g8903 Utricularia gibba HOM05D002860 ORTHO05D003123 1.1e-08 66.2 110 32.7
ClCG10G012630 Citrullus lanatus HOM05D002860 ORTHO05D003123 1.2e-07 62.8 224 26.3
TWI60G0122 Tripterygium wilfordii HOM05D002860 ORTHO05D003123 3.5e-07 61.2 124 33.1
Dinv25193 Davidia involucrata HOM05D002860 ORTHO05D003123 5.0e-06 57.4 119 31.1


User provided reference genes

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