Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.4e-281 971.5 466 100.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 8.5e-114 414.8 441 47.2
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 2.5e-113 413.3 441 46.9
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 3.2e-113 412.9 458 46.1
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.2e-113 412.5 440 48.2
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 5.5e-113 412.1 428 47.0
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 9.4e-113 411.4 425 48.0
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 1.2e-112 411.0 441 46.5
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 6.7e-111 405.2 442 46.8
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.0e-110 403.7 425 46.4
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 3.3e-110 402.9 429 46.2
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.4e-110 401.7 458 44.5
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 7.4e-110 401.7 451 44.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 9.7e-110 401.4 443 44.9
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 9.7e-110 401.4 437 45.3
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 2.8e-109 399.8 429 44.3
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.8e-109 399.8 457 44.6
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 2.8e-109 399.8 428 46.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 3.7e-109 399.4 428 46.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.8e-109 399.1 429 45.7
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 4.8e-109 399.1 428 46.0
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 1.1e-108 397.9 429 44.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.1e-108 397.9 428 46.7
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.8e-108 397.1 428 45.3
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 1.8e-108 397.1 458 43.4
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 1.8e-108 397.1 424 45.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 4.1e-108 396.0 428 46.7
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 7.0e-108 395.2 428 46.5
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 2.6e-107 393.3 458 44.3
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 2.6e-107 393.3 431 45.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.5e-107 392.9 428 45.3
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 4.5e-107 392.5 424 45.0
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 5.9e-107 392.1 425 45.4
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 5.9e-107 392.1 447 44.3
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 5.9e-107 392.1 427 46.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 7.7e-107 391.7 429 45.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 7.7e-107 391.7 429 44.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 1.3e-106 391.0 428 45.1
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.2e-106 390.2 424 44.8
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 2.2e-106 390.2 458 43.4
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.9e-106 389.8 424 44.8
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.9e-106 389.8 424 44.8
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 3.8e-106 389.4 428 45.1
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.8e-106 389.4 451 45.0
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 5.0e-106 389.0 457 43.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 5.0e-106 389.0 429 44.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 5.0e-106 389.0 427 46.1
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 6.5e-106 388.7 458 43.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 8.5e-106 388.3 429 45.2
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 8.5e-106 388.3 428 44.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.1e-105 387.9 429 45.7
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 1.9e-105 387.1 424 45.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 2.5e-105 386.7 459 43.8
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 3.2e-105 386.3 430 44.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 5.5e-105 385.6 428 44.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 9.4e-105 384.8 425 46.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 2.7e-104 383.3 438 42.9
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 3.6e-104 382.9 428 45.8
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 3.6e-104 382.9 439 44.4
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 4.7e-104 382.5 424 46.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 4.7e-104 382.5 429 44.8
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 4.7e-104 382.5 454 43.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 6.1e-104 382.1 454 43.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 8.0e-104 381.7 430 44.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 8.0e-104 381.7 428 45.1
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.0e-103 381.3 425 45.4
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 2.3e-103 380.2 428 43.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 3.0e-103 379.8 429 44.1
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 3.0e-103 379.8 444 42.8
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 5.2e-103 379.0 454 42.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 5.2e-103 379.0 428 43.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.1e-102 377.9 444 45.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.5e-102 377.5 428 42.1
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.5e-102 377.5 436 44.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.5e-102 377.5 428 43.2
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.7e-101 374.0 434 43.3
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.2e-101 373.6 399 43.9
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 3.7e-101 372.9 429 43.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 3.7e-101 372.9 429 43.6
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 3.7e-101 372.9 428 43.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 6.3e-101 372.1 454 41.9
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 8.2e-101 371.7 479 40.3
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.1e-100 371.3 456 42.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 1.4e-100 370.9 429 43.1
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 2.4e-100 370.2 429 43.4
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 2.4e-100 370.2 429 42.9
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 9.1e-100 368.2 429 42.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.2e-99 367.9 429 42.7
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 2.7e-99 366.7 429 43.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 3.5e-99 366.3 429 43.1
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 7.7e-99 365.2 429 42.9
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.3e-98 364.4 424 43.6
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 3.8e-98 362.8 428 43.0
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 6.5e-98 362.1 431 42.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 9.4e-97 358.2 429 42.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 1.2e-96 357.8 428 43.5
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 6.8e-95 352.1 424 43.9
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.3e-93 347.8 424 42.9
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.3e-93 347.8 428 43.7
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 1.3e-93 347.8 428 42.8
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 1.1e-89 334.7 501 37.3
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 2.1e-88 330.5 633 32.2
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 6.3e-85 318.9 428 40.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 2.7e-83 313.5 438 40.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 3.8e-82 309.7 429 39.2
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 4.3e-81 306.2 453 37.3
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 4.7e-80 302.8 393 40.5
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 1.6e-75 287.7 428 36.9
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.2e-72 278.1 456 37.3
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.4e-71 274.6 267 51.7
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 2.3e-58 230.7 202 53.5
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-56 224.9 221 50.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.7e-56 223.0 418 35.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 3.6e-32 143.7 268 31.3
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.9e-29 134.0 176 36.4
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.4e-28 131.7 330 29.4
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.9e-28 131.3 201 34.3
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.0e-26 125.6 227 34.8
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.1e-23 114.0 339 27.1
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.2e-22 112.1 354 25.7
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-19 100.5 96 49.0
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.5e-19 100.5 222 31.1
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 6.0e-19 99.8 252 26.2
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.1e-16 91.3 342 25.7
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-15 89.0 265 25.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 9.0e-15 85.9 184 32.1
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.1e-12 79.0 167 28.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-10 72.0 189 31.7
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.8e-10 71.6 113 37.2
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.2e-08 62.8 161 32.3
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 2.4e-07 61.2 33 84.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.1e-07 60.8 46 65.2


User provided reference genes

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