Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 1.6e-77 292.7 158 100.0
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 4.1e-28 128.6 114 53.5
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 3.5e-27 125.6 114 50.9
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 3.5e-27 125.6 114 50.9
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 3.5e-27 125.6 114 50.0
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 4.6e-27 125.2 113 49.6
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 5.9e-27 124.8 114 50.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 5.9e-27 124.8 114 49.1
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 5.9e-27 124.8 114 48.2
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 5.9e-27 124.8 114 47.4
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.9e-27 124.8 114 49.1
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 7.8e-27 124.4 114 49.1
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 7.8e-27 124.4 114 49.1
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 7.8e-27 124.4 114 49.1
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 7.8e-27 124.4 114 49.1
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 7.8e-27 124.4 112 50.0
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 7.8e-27 124.4 112 50.0
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.0e-26 124.0 114 49.1
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.0e-26 124.0 114 48.2
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.0e-26 124.0 114 47.4
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 1.0e-26 124.0 113 49.6
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.0e-26 124.0 114 48.2
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.3e-26 123.6 114 46.5
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 1.3e-26 123.6 114 46.5
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-26 123.2 114 48.2
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.7e-26 123.2 114 49.1
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 1.7e-26 123.2 114 48.2
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.7e-26 123.2 114 50.0
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.7e-26 123.2 114 48.2
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.7e-26 123.2 114 46.5
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 47.4
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 47.4
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 49.1
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 48.2
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 49.1
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 49.1
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 49.1
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.3e-26 122.9 114 48.2
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 46.5
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 50.0
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 50.0
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 50.0
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 50.0
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 50.0
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 47.4
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 46.5
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 50.0
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 46.5
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 47.4
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 48.2
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 48.2
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 48.2
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 48.2
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 3.0e-26 122.5 114 48.2
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 3.9e-26 122.1 114 48.2
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 49.1
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 49.1
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 49.1
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 48.2
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 47.4
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 47.4
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 47.4
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 47.4
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 47.4
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 5.0e-26 121.7 114 47.4
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 48.2
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 49.1
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 49.1
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 50.0
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 47.4
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 45.6
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 6.6e-26 121.3 114 48.2
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 8.6e-26 120.9 114 47.4
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 8.6e-26 120.9 114 46.5
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 8.6e-26 120.9 114 47.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 8.6e-26 120.9 114 46.5
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.1e-25 120.6 114 48.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 1.1e-25 120.6 114 47.4
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.5e-25 120.2 114 46.5
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.5e-25 120.2 114 48.2
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.5e-25 120.2 114 47.4
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.5e-25 120.2 114 47.4
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.5e-25 120.2 113 46.9
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-25 119.8 113 46.9
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.9e-25 119.8 114 48.2
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.9e-25 119.8 114 46.5
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-25 119.4 114 46.5
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.3e-25 119.0 114 46.5
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.3e-25 119.0 114 46.5
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 3.3e-25 119.0 114 47.4
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.3e-25 119.0 114 47.4
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 3.3e-25 119.0 114 45.6
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 4.3e-25 118.6 114 46.5
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 4.3e-25 118.6 113 47.8
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.6e-25 118.2 114 45.6
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 5.6e-25 118.2 113 46.9
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 7.3e-25 117.9 113 46.0
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 7.3e-25 117.9 114 47.4
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 9.5e-25 117.5 114 45.6
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 9.5e-25 117.5 113 46.9
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 9.5e-25 117.5 114 45.6
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-24 117.1 114 45.6
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.2e-24 117.1 114 45.6
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.2e-24 117.1 114 46.5
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.6e-24 116.7 114 45.6
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.6e-24 116.7 114 45.6
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-24 116.7 114 45.6
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-24 116.7 114 45.6
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.6e-24 116.7 114 45.6
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.6e-24 116.7 114 45.6
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.1e-24 116.3 114 45.6
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 2.1e-24 116.3 114 45.6
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 2.8e-24 115.9 114 47.4
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 2.8e-24 115.9 114 44.7
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 2.8e-24 115.9 114 45.6
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.8e-24 115.9 114 44.7
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 2.8e-24 115.9 115 47.8
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.8e-24 115.9 112 49.1
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 3.6e-24 115.5 114 44.7
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 3.6e-24 115.5 114 44.7
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.6e-24 115.5 113 46.9
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 6.2e-24 114.8 113 46.9
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.4e-23 113.6 112 47.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.4e-23 113.6 112 45.5
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.4e-23 113.6 113 45.1
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.4e-23 113.6 114 44.7
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.8e-23 113.2 113 44.2
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 2.3e-23 112.8 102 52.9
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 1.5e-22 110.2 114 43.9
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 2.6e-22 109.4 186 32.3
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 3.4e-22 109.0 114 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 4.4e-22 108.6 107 49.5
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 6.4e-21 104.8 126 43.7
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 3.5e-19 99.0 91 50.5
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 4.6e-19 98.6 113 43.4
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 3.0e-18 95.9 89 50.6
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.2e-16 90.5 86 51.2
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-15 87.0 81 46.9
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-15 87.0 89 47.2
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-15 85.5 80 46.2
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-15 85.5 80 45.0
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-11 73.9 54 53.7
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-11 72.8 54 51.9
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-11 72.8 54 51.9
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 8.6e-10 67.8 89 39.3
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 1.1e-09 67.4 70 45.7
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 3.3e-09 65.9 54 50.0
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 2.3e-07 59.7 60 46.7
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.0e-07 58.9 56 50.0
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 3.4e-06 55.8 43 55.8
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 3.4e-06 55.8 55 47.3


User provided reference genes

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