Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g5660 Chara braunii HOM05D000693 ORTHO05D002444 1.1e-89 333.2 164 100.0
Pp3c26_13080 Physcomitrium patens HOM05D000693 ORTHO05D002444 9.2e-23 110.9 107 48.6
Mapoly0003s0242 Marchantia polymorpha HOM05D000693 ORTHO05D002444 3.5e-22 109.0 105 46.7
Pp3c6_270 Physcomitrium patens HOM05D000693 ORTHO05D002444 6.0e-22 108.2 108 49.1
Zm00001eb098280 Zea mays HOM05D000693 ORTHO05D002444 9.5e-20 100.9 97 50.5
Rhsim12G0116500 Rhododendron simsii HOM05D000693 ORTHO05D002444 1.2e-19 100.5 128 42.2
Nn3g16847 Nelumbo nucifera HOM05D000693 ORTHO05D002444 2.8e-19 99.4 97 49.5
SEGI_38479 Sequoiadendron giganteum HOM05D000693 ORTHO05D002444 1.1e-18 97.4 94 52.1
Solyc01g008010.3 Solanum lycopersicum HOM05D000693 ORTHO05D002444 1.1e-18 97.4 125 43.2
Hma1.2p1_0160F.1_g070960 Hydrangea macrophylla HOM05D000693 ORTHO05D002444 1.4e-18 97.1 137 40.1
Pp3c1_10570 Physcomitrium patens HOM05D000693 ORTHO05D002444 1.4e-18 97.1 97 47.4
CSS0022624 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D002444 1.8e-18 96.7 129 42.6
Sopen01g003570 Solanum pennellii HOM05D000693 ORTHO05D002444 2.4e-18 96.3 125 42.4
Actinidia13504 Actinidia chinensis HOM05D000693 ORTHO05D002444 3.1e-18 95.9 134 40.3
Oeu056404.1 Olea europaea HOM05D000693 ORTHO05D002444 3.1e-18 95.9 124 41.1
HPP92_008037 Vanilla planifolia HOM05D000693 ORTHO05D002444 3.1e-18 95.9 122 41.8
Sabra10G0025700 Salix brachista HOM05D000693 ORTHO05D002444 4.0e-18 95.5 116 43.1
Duzib268G0613 Durio zibethinus HOM05D000693 ORTHO05D002444 5.2e-18 95.1 122 41.8
MBI16_g27092_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D002444 5.2e-18 95.1 97 48.5
Os09g0327550 Oryza sativa ssp. japonica HOM05D000693 ORTHO05D002444 5.2e-18 95.1 97 45.4
Aqoxy3G02921 Aquilegia oxysepala HOM05D000693 ORTHO05D002444 6.8e-18 94.7 97 47.4
AL2G29850 Arabidopsis lyrata HOM05D000693 ORTHO05D002444 6.8e-18 94.7 122 43.4
Cc11_g14740 Coffea canephora HOM05D000693 ORTHO05D002444 6.8e-18 94.7 138 38.4
Hund25356 Selenicereus undatus HOM05D000693 ORTHO05D002444 6.8e-18 94.7 97 46.4
BcaC08g46490 Brassica carinata HOM05D000693 ORTHO05D002444 8.9e-18 94.4 116 44.0
A07p36860 Brassica napus HOM05D000693 ORTHO05D002444 8.9e-18 94.4 116 44.0
C06p44330 Brassica napus HOM05D000693 ORTHO05D002444 8.9e-18 94.4 116 44.0
BolC6t39504H Brassica oleracea HOM05D000693 ORTHO05D002444 8.9e-18 94.4 116 44.0
BraA07t31251Z Brassica rapa HOM05D000693 ORTHO05D002444 8.9e-18 94.4 116 44.0
GSVIVG01013760001 Vitis vinifera HOM05D000693 ORTHO05D002444 8.9e-18 94.4 97 47.4
Atru.chr11.2045 Acer truncatum HOM05D000693 ORTHO05D002444 1.2e-17 94.0 129 40.3
Glyma.08G285800 Glycine max HOM05D000693 ORTHO05D002444 1.2e-17 94.0 97 48.5
Potri.010G041700 Populus trichocarpa HOM05D000693 ORTHO05D002444 1.2e-17 94.0 140 37.9
PGSC0003DMG401016407 Solanum tuberosum HOM05D000693 ORTHO05D002444 1.2e-17 94.0 124 41.9
ATR1091G105 Amborella trichopoda HOM05D000693 ORTHO05D002444 1.5e-17 93.6 124 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4112 Anthoceros agrestis HOM05D000693 ORTHO05D002444 1.5e-17 93.6 117 40.2
AT1G70480 Arabidopsis thaliana HOM05D000693 ORTHO05D002444 1.5e-17 93.6 117 46.2
Duzib251G0648 Durio zibethinus HOM05D000693 ORTHO05D002444 1.5e-17 93.6 123 40.7
MD16G1094700 Malus domestica HOM05D000693 ORTHO05D002444 1.5e-17 93.6 116 43.1
Ah.03g132760 Amaranthus hybridus HOM05D000693 ORTHO05D002444 2.0e-17 93.2 97 46.4
QL03p059849 Quercus lobata HOM05D000693 ORTHO05D002444 2.0e-17 93.2 115 42.6
Glyma.18G139000 Glycine max HOM05D000693 ORTHO05D002444 2.6e-17 92.8 97 48.5
PSO170G0360 Papaver somniferum HOM05D000693 ORTHO05D002444 2.6e-17 92.8 97 45.4
PSO210G2533 Papaver somniferum HOM05D000693 ORTHO05D002444 2.6e-17 92.8 97 45.4
Peaxi162Scf00952g00021 Petunia axillaris HOM05D000693 ORTHO05D002444 2.6e-17 92.8 114 43.0
VMungo0251G3059 Vigna mungo HOM05D000693 ORTHO05D002444 2.6e-17 92.8 97 49.5
Ah.02g129980 Amaranthus hybridus HOM05D000693 ORTHO05D001102 3.4e-17 92.4 96 45.8
Ciclev10032036m.g Citrus clementina HOM05D000693 ORTHO05D002444 3.4e-17 92.4 123 39.8
Haze_12195 Corylus avellana HOM05D000693 ORTHO05D001102 3.4e-17 92.4 122 39.3
Prupe.1G251900 Prunus persica HOM05D000693 ORTHO05D002444 4.4e-17 92.0 116 41.4
THA.LOC104822970 Tarenaya hassleriana HOM05D000693 ORTHO05D002444 5.8e-17 91.7 117 42.7
vmacro16238 Vaccinium macrocarpon HOM05D000693 ORTHO05D002444 5.8e-17 91.7 133 38.3
Carub.0002s1716 Capsella rubella HOM05D000693 ORTHO05D002444 7.6e-17 91.3 117 42.7
Dinv15283 Davidia involucrata HOM05D000693 ORTHO05D002444 7.6e-17 91.3 134 37.3
Thhalv10019595m.g Eutrema salsugineum HOM05D000693 ORTHO05D002444 7.6e-17 91.3 117 43.6
CARHR063640 Cardamine hirsuta HOM05D000693 ORTHO05D002444 9.9e-17 90.9 97 48.5
Lsat_1_v5_gn_4_5501 Lactuca sativa HOM05D000693 ORTHO05D002444 9.9e-17 90.9 118 39.8
Manes.12G027600 Manihot esculenta HOM05D000693 ORTHO05D002444 9.9e-17 90.9 112 43.8
TAR629G3151 Trochodendron aralioides HOM05D000693 ORTHO05D002444 9.9e-17 90.9 132 39.4
AUR62005392 Chenopodium quinoa HOM05D000693 ORTHO05D002444 1.3e-16 90.5 95 46.3
CsaV3_2G024620 Cucumis sativus L. HOM05D000693 ORTHO05D002444 1.7e-16 90.1 128 39.8
Gohir.A12G143400 Gossypium hirsutum HOM05D000693 ORTHO05D002444 1.7e-16 90.1 125 40.0
Nitab4.5_0004039g0040 Nicotiana tabacum HOM05D000693 ORTHO05D002444 1.7e-16 90.1 124 38.7
Cpa.g.sc69.58 Carica papaya HOM05D000693 ORTHO05D002444 2.2e-16 89.7 94 48.9
Cfa009162 Carpinus fangiana HOM05D000693 ORTHO05D002444 2.2e-16 89.7 122 38.5
ClCG08G017980 Citrullus lanatus HOM05D000693 ORTHO05D002444 2.2e-16 89.7 127 40.2
Eucgr.H02587 Eucalyptus grandis HOM05D000693 ORTHO05D002444 2.2e-16 89.7 117 41.0
Thecc.02G252000 Theobroma cacao HOM05D000693 ORTHO05D002444 2.2e-16 89.7 122 40.2
TPR.G11684 Trifolium pratense HOM05D000693 ORTHO05D002444 2.2e-16 89.7 97 45.4
EL10Ac6g13690 Beta vulgaris HOM05D000693 ORTHO05D002444 2.9e-16 89.4 90 48.9
Lj4g0011834 Lotus japonicus HOM05D000693 ORTHO05D002444 2.9e-16 89.4 97 46.4
AUR62014054 Chenopodium quinoa HOM05D000693 ORTHO05D002444 3.8e-16 89.0 93 48.4
FvH4_4g34241 Fragaria vesca HOM05D000693 ORTHO05D002444 3.8e-16 89.0 116 40.5
Nitab4.5_0000069g0380 Nicotiana tabacum HOM05D000693 ORTHO05D002444 3.8e-16 89.0 124 37.9
CBR_g38945 Chara braunii HOM05D000693 ORTHO05D002444 4.9e-16 88.6 97 44.3
Ca_22670_v3 Cicer arietinum L. HOM05D000693 ORTHO05D002444 4.9e-16 88.6 97 45.4
Gorai.008G159400 Gossypium raimondii HOM05D000693 ORTHO05D002444 4.9e-16 88.6 119 41.2
Medtr8g064820 Medicago truncatula HOM05D000693 ORTHO05D002444 4.9e-16 88.6 97 45.4
MSTRG.593 Avicennia marina HOM05D000693 ORTHO05D002444 6.4e-16 88.2 96 46.9
Gohir.A01G161600 Gossypium hirsutum HOM05D000693 ORTHO05D002444 6.4e-16 88.2 123 38.2
Gorai.002G185100 Gossypium raimondii HOM05D000693 ORTHO05D002444 6.4e-16 88.2 123 38.2
MD13G1093500 Malus domestica HOM05D000693 ORTHO05D002444 6.4e-16 88.2 97 44.3
PGR119G0615 Punica granatum HOM05D000693 ORTHO05D002444 6.4e-16 88.2 97 45.4
SMO356G0741 Selaginella moellendorffii HOM05D000693 ORTHO05D002444 6.4e-16 88.2 97 42.3
Sc11g0001130 Simmondsia chinensis HOM05D000693 ORTHO05D002444 6.4e-16 88.2 97 44.3
COL.COLO4_24188 Corchorus olitorius HOM05D000693 ORTHO05D002444 8.4e-16 87.8 125 39.2
Sp5g25550 Schrenkiella parvula HOM05D000693 ORTHO05D002444 8.4e-16 87.8 97 45.4
Gohir.D01G149000 Gossypium hirsutum HOM05D000693 ORTHO05D002444 1.1e-15 87.4 136 36.8
MELO3C010664.2 Cucumis melo HOM05D000693 ORTHO05D002444 1.4e-15 87.0 122 41.0
Gohir.A05G314100 Gossypium hirsutum HOM05D000693 ORTHO05D002444 1.9e-15 86.7 122 39.3
Mapoly0075s0073 Marchantia polymorpha HOM05D000693 ORTHO05D002444 1.9e-15 86.7 128 38.3
RcHm_v2.0_Chr4g0443711 Rosa chinensis HOM05D000693 ORTHO05D002444 1.9e-15 86.7 116 39.7
Sed0026964 Sechium edule HOM05D000693 ORTHO05D002444 1.9e-15 86.7 95 45.3
Gohir.D05G315600 Gossypium hirsutum HOM05D000693 ORTHO05D002444 3.2e-15 85.9 122 40.2
Phvul.003G061200 Phaseolus vulgaris HOM05D000693 ORTHO05D002444 3.2e-15 85.9 97 45.4
TWI75G0062 Tripterygium wilfordii HOM05D000693 ORTHO05D002444 3.2e-15 85.9 97 43.3
Gohir.D12G148100 Gossypium hirsutum HOM05D000693 ORTHO05D002444 4.2e-15 85.5 119 40.3
Lalb_Chr09g0334961 Lupinus albus HOM05D000693 ORTHO05D002444 4.2e-15 85.5 97 44.3
Gorai.009G337600 Gossypium raimondii HOM05D000693 ORTHO05D002444 5.4e-15 85.1 95 45.3
CANSAT01G1778 Cannabis sativa HOM05D000693 ORTHO05D002444 7.1e-15 84.7 125 37.6
CDE06G2720 Ceratophyllum demersum HOM05D000693 ORTHO05D002444 7.1e-15 84.7 97 42.3
arahy.Tifrunner.gnm1.ann1.LW7WL4 Arachis hypogaea HOM05D000693 ORTHO05D002444 9.2e-15 84.3 97 43.3
arahy.Tifrunner.gnm1.ann1.Q9BF43 Arachis hypogaea HOM05D000693 ORTHO05D002444 9.2e-15 84.3 97 43.3
Hund06001 Selenicereus undatus HOM05D000693 ORTHO05D002444 1.6e-14 83.6 138 37.7
DCAR_026535 Daucus carota HOM05D000693 ORTHO05D002444 2.1e-14 83.2 97 41.2
CDE02G1567 Ceratophyllum demersum HOM05D000693 ORTHO05D002444 2.7e-14 82.8 94 41.5
Pp3c15_5040 Physcomitrium patens HOM05D000693 ORTHO05D002444 2.7e-14 82.8 94 43.6
HanXRQChr12g0383561 Helianthus annuus HOM05D000693 ORTHO05D002444 3.5e-14 82.4 97 40.2
SalBow2G3571 Salvia bowleyana HOM05D000693 ORTHO05D000554 6.0e-14 81.6 113 40.7
ECA234G3969 Erigeron canadensis HOM05D000693 ORTHO05D002444 1.0e-13 80.9 92 43.5
Migut.L01419 Erythranthe guttata HOM05D000693 ORTHO05D002444 2.3e-13 79.7 132 36.4
Psat4g124640 Pisum sativum HOM05D000693 ORTHO05D002444 6.6e-13 78.2 90 44.4
FAN12G0379 Fragaria x ananassa HOM05D000693 ORTHO05D002444 8.7e-13 77.8 134 35.1
Lj3A1054T85 Lonicera japonica HOM05D000693 ORTHO05D002444 1.5e-12 77.0 103 39.8
BcaB03g14140 Brassica carinata HOM05D000693 ORTHO05D002444 4.3e-12 75.5 98 38.8
BcaC06g35046 Brassica carinata HOM05D000693 ORTHO05D002444 4.3e-12 75.5 98 38.8
C07p20350 Brassica napus HOM05D000693 ORTHO05D002444 4.3e-12 75.5 98 38.8
BolC7t42555H Brassica oleracea HOM05D000693 ORTHO05D002444 4.3e-12 75.5 98 38.8
BraA07t29131Z Brassica rapa HOM05D000693 ORTHO05D002444 4.3e-12 75.5 98 38.8
SGA_v2.0_scaffold165G38236 Striga asiatica HOM05D000693 ORTHO05D002444 1.2e-11 73.9 112 38.4
Aa31LG7G7500 Aethionema arabicum HOM05D000693 ORTHO05D002444 2.8e-11 72.8 121 33.9
THA.LOC104822153 Tarenaya hassleriana HOM05D000693 ORTHO05D002444 4.7e-11 72.0 93 38.7
Aa31LG4G10470 Aethionema arabicum HOM05D000693 ORTHO05D002444 6.2e-11 71.6 121 36.4
Sp1g21020 Schrenkiella parvula HOM05D000693 ORTHO05D002444 6.2e-11 71.6 98 35.7
Pp3c2_10400 Physcomitrium patens HOM05D000693 ORTHO05D002444 8.1e-11 71.2 90 37.8
FAN17G1681 Fragaria x ananassa HOM05D000693 ORTHO05D002444 1.1e-10 70.9 116 35.3
A08p28090 Brassica napus HOM05D000693 ORTHO05D002444 1.4e-10 70.5 96 35.4
BraA08t34735Z Brassica rapa HOM05D000693 ORTHO05D002444 1.4e-10 70.5 96 35.4
Carub.0001s2310 Capsella rubella HOM05D000693 ORTHO05D002444 1.4e-10 70.5 96 35.4
FAN07G0393 Fragaria x ananassa HOM05D000693 ORTHO05D001102 1.4e-10 70.5 116 35.3
Thhalv10008158m.g Eutrema salsugineum HOM05D000693 ORTHO05D002444 1.8e-10 70.1 93 35.5
AT1G23560 Arabidopsis thaliana HOM05D000693 ORTHO05D002444 3.1e-10 69.3 96 36.5
BcaB03g11952 Brassica carinata HOM05D000693 ORTHO05D002444 6.9e-10 68.2 96 34.4
C08p22080 Brassica napus HOM05D000693 ORTHO05D002444 6.9e-10 68.2 96 34.4
BolC8t49852H Brassica oleracea HOM05D000693 ORTHO05D002444 6.9e-10 68.2 96 34.4
BcaC07g39212 Brassica carinata HOM05D000693 ORTHO05D002444 9.0e-10 67.8 96 33.3
AL1G37320 Arabidopsis lyrata HOM05D000693 ORTHO05D002444 1.2e-09 67.4 96 35.4
FAN22G1713 Fragaria x ananassa HOM05D000693 ORTHO05D002444 1.5e-09 67.0 116 34.5
CARHR023990 Cardamine hirsuta HOM05D000693 ORTHO05D002444 7.6e-09 64.7 92 33.7
THA.LOC109117023 Tarenaya hassleriana HOM05D000693 ORTHO05D002444 2.9e-08 62.8 86 37.2
CAN.G282.68 Capsicum annuum HOM05D000693 ORTHO05D002444 4.9e-08 62.0 77 41.6
Pp3c7_20050 Physcomitrium patens HOM05D000693 ORTHO05D002444 4.9e-08 62.0 69 47.8
unitig_22.g6936 Utricularia gibba HOM05D000693 ORTHO05D002444 6.4e-08 61.6 67 44.8
Hund25357 Selenicereus undatus HOM05D000693 ORTHO05D002444 2.4e-07 59.7 48 54.2


User provided reference genes

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