Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.0e-246 856.3 439 100.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.5e-99 367.5 430 49.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 9.5e-99 364.8 430 50.0
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.0e-92 344.7 430 48.4
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 6.6e-92 342.0 428 48.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 4.7e-90 335.9 432 48.6
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.4e-86 324.3 431 43.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.6e-80 303.5 433 41.8
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.8e-80 302.4 435 42.8
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 4.1e-78 296.2 439 42.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.7e-77 293.5 443 40.2
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.0e-76 291.6 432 41.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.1e-75 288.1 438 41.8
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.1e-75 288.1 438 41.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.5e-75 287.0 430 39.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.6e-74 284.3 444 39.4
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 3.6e-74 283.1 432 38.9
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.1e-73 280.0 431 38.3
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.2e-73 279.3 436 38.8
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-72 277.3 433 40.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.6e-72 276.9 433 40.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.4e-72 276.2 443 40.2
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 7.6e-72 275.4 436 39.9
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 9.9e-72 275.0 444 39.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.8e-71 273.1 406 41.9
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.9e-71 272.7 430 39.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 6.4e-71 272.3 446 38.8
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 6.4e-71 272.3 432 40.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 8.4e-71 271.9 437 40.3
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 3.2e-70 270.0 432 40.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 3.2e-70 270.0 440 38.4
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.2e-70 269.6 433 38.8
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 7.1e-70 268.9 431 38.1
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 7.1e-70 268.9 428 40.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.6e-69 267.7 430 39.8
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.1e-69 267.3 429 36.6
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.1e-69 267.3 428 39.7
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-69 266.5 434 38.9
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 4.6e-69 266.2 432 38.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 4.6e-69 266.2 432 38.7
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 6.0e-69 265.8 431 37.4
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 6.0e-69 265.8 436 38.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 6.0e-69 265.8 432 38.9
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 7.8e-69 265.4 441 37.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-68 264.2 434 38.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.3e-68 263.8 428 36.7
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.3e-68 263.8 436 37.6
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 3.0e-68 263.5 429 36.1
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.9e-68 263.1 439 37.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 5.1e-68 262.7 428 38.6
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 5.1e-68 262.7 456 36.8
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 5.1e-68 262.7 442 38.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 6.6e-68 262.3 428 38.6
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 6.6e-68 262.3 436 37.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 8.7e-68 261.9 429 36.4
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 8.7e-68 261.9 452 38.3
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.1e-67 261.5 448 38.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.1e-67 261.5 442 38.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.5e-67 261.2 434 37.6
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.9e-67 260.8 443 36.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.5e-67 260.4 433 37.2
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.3e-67 260.0 456 36.6
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.3e-67 260.0 455 37.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.3e-67 259.6 440 39.3
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.3e-67 259.6 435 38.4
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.6e-67 259.2 428 38.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.6e-67 259.2 428 38.3
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.6e-67 259.2 428 38.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.6e-67 259.2 436 38.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 9.6e-67 258.5 436 37.4
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 9.6e-67 258.5 446 38.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.6e-66 257.7 431 37.8
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.6e-66 257.7 444 36.9
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.8e-66 256.9 425 38.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.1e-65 255.0 436 38.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.4e-65 254.6 431 37.1
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.4e-65 254.6 432 38.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-65 254.6 432 38.2
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.4e-65 254.6 440 38.0
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.8e-65 254.2 437 37.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.8e-65 254.2 432 38.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.4e-65 253.8 432 37.0
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.4e-65 253.8 450 38.2
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.1e-65 253.4 439 36.9
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.1e-65 253.4 446 35.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 4.0e-65 253.1 480 35.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.3e-65 252.7 432 38.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.2e-64 251.5 432 38.4
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.5e-64 251.1 432 38.2
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 2.6e-64 250.4 429 36.4
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-64 250.4 432 37.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.4e-64 250.0 442 37.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.7e-63 247.7 430 37.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 3.8e-63 246.5 445 36.6
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 6.4e-63 245.7 479 34.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.4e-62 244.6 450 36.0
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 4.2e-62 243.0 417 37.2
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 7.1e-62 242.3 407 39.3
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 7.1e-62 242.3 451 35.7
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 9.3e-62 241.9 431 36.2
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.6e-61 241.1 450 35.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.6e-61 241.1 491 33.6
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 6.0e-61 239.2 447 35.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 7.9e-61 238.8 379 38.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.7e-60 237.7 450 37.1
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.9e-60 236.5 432 37.0
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 6.6e-60 235.7 429 35.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 2.5e-59 233.8 466 34.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-56 224.2 402 36.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.2e-54 216.9 445 34.4
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.2e-50 202.6 335 37.0
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.4e-49 200.7 445 32.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.2e-48 198.4 417 35.3
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 8.4e-47 192.2 334 35.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.8e-44 184.5 327 36.1
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 5.7e-43 179.5 437 33.0
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 5.3e-41 172.9 321 34.9
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.5e-40 171.4 195 49.7
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.0e-31 139.8 185 45.4
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 8.5e-31 139.0 295 31.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.9e-23 114.0 553 25.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 8.5e-23 112.5 196 35.2
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.1e-22 112.1 206 35.0
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-20 104.8 99 57.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.6e-19 100.9 251 30.3
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 7.4e-19 99.4 205 31.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-10 70.9 169 30.8
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.8e-10 70.9 215 30.2
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.8e-10 70.9 215 30.2
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 4.1e-09 67.0 60 61.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 7.7e-08 62.8 135 31.9
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.5e-06 57.8 132 28.8


User provided reference genes

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