Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g55399 Chara braunii HOM05D004991 ORTHO05D006690 1.2e-294 1015.8 521 100.0
Mapoly0103s0064 Marchantia polymorpha HOM05D004991 ORTHO05D006690 1.2e-103 381.3 513 45.2
SMO364G0598 Selaginella moellendorffii HOM05D004991 ORTHO05D006690 4.6e-100 369.4 482 45.9
AagrBONN_evm.TU.Sc2ySwM_344.798 Anthoceros agrestis HOM05D004991 ORTHO05D006690 1.7e-99 367.5 469 46.3
Pp3c1_10120 Physcomitrium patens HOM05D004991 ORTHO05D006690 2.5e-98 363.6 555 42.2
Dinv34534 Davidia involucrata HOM05D004991 ORTHO05D006690 2.1e-97 360.5 435 46.2
Pp3c2_28300 Physcomitrium patens HOM05D004991 ORTHO05D006690 1.5e-95 354.4 598 39.3
Sabra12G0082800 Salix brachista HOM05D004991 ORTHO05D006690 5.8e-95 352.4 432 47.2
Nn1g00766 Nelumbo nucifera HOM05D004991 ORTHO05D006690 1.3e-94 351.3 492 42.9
Potri.012G113700 Populus trichocarpa HOM05D004991 ORTHO05D006690 1.6e-92 344.4 465 43.9
Rhsim09G0188500 Rhododendron simsii HOM05D004991 ORTHO05D006690 6.0e-92 342.4 475 43.4
TWI14G0627 Tripterygium wilfordii HOM05D004991 ORTHO05D006690 7.8e-92 342.0 460 43.0
PGR042G3269 Punica granatum HOM05D004991 ORTHO05D006690 1.3e-91 341.3 499 41.5
Potri.015G111200 Populus trichocarpa HOM05D004991 ORTHO05D006690 1.7e-91 340.9 465 42.8
TAR375G0717 Trochodendron aralioides HOM05D004991 ORTHO05D006690 1.7e-91 340.9 530 41.1
Dinv16894 Davidia involucrata HOM05D004991 ORTHO05D006690 6.6e-91 339.0 484 42.4
Zm00001eb322080 Zea mays HOM05D004991 ORTHO05D006690 6.6e-91 339.0 508 42.5
Zm00001eb322110 Zea mays HOM05D004991 ORTHO05D006690 6.6e-91 339.0 508 42.5
Cc00_g13040 Coffea canephora HOM05D004991 ORTHO05D006690 8.6e-91 338.6 535 41.3
CANSAT56G0842 Cannabis sativa HOM05D004991 ORTHO05D006690 1.9e-90 337.4 465 42.4
Hund14297 Selenicereus undatus HOM05D004991 ORTHO05D006690 1.9e-90 337.4 488 42.4
Ah.12g058550 Amaranthus hybridus HOM05D004991 ORTHO05D006690 2.5e-90 337.0 465 43.7
MD07G1241200 Malus domestica HOM05D004991 ORTHO05D006690 3.3e-90 336.7 516 41.3
Thecc.03G145300 Theobroma cacao HOM05D004991 ORTHO05D006690 4.3e-90 336.3 495 41.0
CAN.G1016.3 Capsicum annuum HOM05D004991 ORTHO05D006690 7.3e-90 335.5 460 43.9
EL10Ac5g12571 Beta vulgaris HOM05D004991 ORTHO05D006690 9.6e-90 335.1 422 45.5
Hma1.2p1_0502F.1_g167940 Hydrangea macrophylla HOM05D004991 ORTHO05D006690 1.2e-89 334.7 521 42.0
Peaxi162Scf00073g01724 Petunia axillaris HOM05D004991 ORTHO05D006690 1.2e-89 334.7 482 42.1
Manes.14G041100 Manihot esculenta HOM05D004991 ORTHO05D006690 1.6e-89 334.3 462 43.5
Lj8A49G38 Lonicera japonica HOM05D004991 ORTHO05D006690 2.1e-89 334.0 493 42.0
Sabra15G0133000 Salix brachista HOM05D004991 ORTHO05D006690 2.1e-89 334.0 465 42.6
Sopen03g024840 Solanum pennellii HOM05D004991 ORTHO05D006690 2.1e-89 334.0 460 43.7
Sopen06g002160 Solanum pennellii HOM05D004991 ORTHO05D006690 2.1e-89 334.0 460 43.7
CiPaw.07G183100 Carya illinoinensis HOM05D004991 ORTHO05D006690 2.8e-89 333.6 481 41.8
PSO063G0983 Papaver somniferum HOM05D004991 ORTHO05D006690 2.8e-89 333.6 460 42.6
Prupe.2G270300 Prunus persica HOM05D004991 ORTHO05D006690 2.8e-89 333.6 483 41.4
PSO782G2232 Papaver somniferum HOM05D004991 ORTHO05D006690 4.7e-89 332.8 460 42.6
FvH4_7g26640 Fragaria vesca HOM05D004991 ORTHO05D006690 6.2e-89 332.4 472 42.2
Cfa013604 Carpinus fangiana HOM05D004991 ORTHO05D006690 8.1e-89 332.0 483 42.4
AUR62030431 Chenopodium quinoa HOM05D004991 ORTHO05D006690 8.1e-89 332.0 465 41.9
RcHm_v2.0_Chr1g0373261 Rosa chinensis HOM05D004991 ORTHO05D006690 8.1e-89 332.0 472 42.4
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 1.1e-88 331.6 484 41.7
Eucgr.A02933 Eucalyptus grandis HOM05D004991 ORTHO05D006690 1.1e-88 331.6 452 42.9
Gohir.A03G061000 Gossypium hirsutum HOM05D004991 ORTHO05D006690 1.1e-88 331.6 516 40.1
COL.COLO4_37308 Corchorus olitorius HOM05D004991 ORTHO05D006690 1.4e-88 331.3 479 41.1
DCAR_014644 Daucus carota HOM05D004991 ORTHO05D006690 1.4e-88 331.3 492 42.1
Lsat_1_v5_gn_9_58401 Lactuca sativa HOM05D004991 ORTHO05D006690 1.4e-88 331.3 460 43.3
Actinidia01035 Actinidia chinensis HOM05D004991 ORTHO05D006690 1.8e-88 330.9 460 42.4
PGSC0003DMG400008342 Solanum tuberosum HOM05D004991 ORTHO05D006690 1.8e-88 330.9 460 43.5
TWI39G0803 Tripterygium wilfordii HOM05D004991 ORTHO05D006690 1.8e-88 330.9 460 42.0
Manes.06G129800 Manihot esculenta HOM05D004991 ORTHO05D006690 4.0e-88 329.7 501 41.9
VMungo0720G1976 Vigna mungo HOM05D004991 ORTHO05D006690 4.0e-88 329.7 465 42.2
Ciclev10031244m.g Citrus clementina HOM05D004991 ORTHO05D006690 8.9e-88 328.6 481 42.0
Duzib068G0066 Durio zibethinus HOM05D004991 ORTHO05D006690 1.5e-87 327.8 495 40.6
Lalb_Chr21g0312591 Lupinus albus HOM05D004991 ORTHO05D006690 2.0e-87 327.4 465 41.7
Gorai.003G111000 Gossypium raimondii HOM05D004991 ORTHO05D006690 2.6e-87 327.0 517 40.2
MSTRG.27231 Avicennia marina HOM05D004991 ORTHO05D006690 3.4e-87 326.6 529 39.9
Lj5g0020821 Lotus japonicus HOM05D004991 ORTHO05D006690 4.4e-87 326.2 466 42.3
Migut.F00542 Erythranthe guttata HOM05D004991 ORTHO05D006690 7.6e-87 325.5 530 39.6
CDE11G0390 Ceratophyllum demersum HOM05D004991 ORTHO05D006690 1.3e-86 324.7 428 44.6
FAN03G3358 Fragaria x ananassa HOM05D004991 ORTHO05D006690 1.3e-86 324.7 497 40.0
GSVIVG01024473001 Vitis vinifera HOM05D004991 ORTHO05D006690 1.3e-86 324.7 507 40.2
Gohir.D03G105000 Gossypium hirsutum HOM05D004991 ORTHO05D006690 2.2e-86 323.9 517 39.7
Psat6g140160 Pisum sativum HOM05D004991 ORTHO05D006690 2.2e-86 323.9 482 41.7
CDE02G4339 Ceratophyllum demersum HOM05D004991 ORTHO05D006690 2.9e-86 323.6 466 42.3
Glyma.10G191600 Glycine max HOM05D004991 ORTHO05D006690 3.8e-86 323.2 499 40.9
QL09p027386 Quercus lobata HOM05D004991 ORTHO05D006690 3.8e-86 323.2 539 38.8
Lalb_Chr06g0169601 Lupinus albus HOM05D004991 ORTHO05D006690 6.4e-86 322.4 503 40.8
MBI04_g13852_MAGBIO Magnolia biondii HOM05D004991 ORTHO05D006690 2.4e-85 320.5 550 39.1
Carub.0008s1119 Capsella rubella HOM05D004991 ORTHO05D006690 3.2e-85 320.1 465 42.6
ECA232G0310 Erigeron canadensis HOM05D004991 ORTHO05D006690 4.2e-85 319.7 481 41.4
arahy.Tifrunner.gnm1.ann1.A0K4XE Arachis hypogaea HOM05D004991 ORTHO05D006690 5.4e-85 319.3 468 40.8
arahy.Tifrunner.gnm1.ann1.GMTF4T Arachis hypogaea HOM05D004991 ORTHO05D006690 5.4e-85 319.3 468 40.8
Medtr1g072830 Medicago truncatula HOM05D004991 ORTHO05D006690 5.4e-85 319.3 507 40.2
Atru.chr6.1976 Acer truncatum HOM05D004991 ORTHO05D006690 7.1e-85 318.9 481 40.7
A03p16270 Brassica napus HOM05D004991 ORTHO05D006690 7.1e-85 318.9 493 40.0
Gohir.A09G248400 Gossypium hirsutum HOM05D004991 ORTHO05D006690 7.1e-85 318.9 533 38.6
Sed0019867 Sechium edule HOM05D004991 ORTHO05D006690 7.1e-85 318.9 486 41.2
ATR0665G298 Amborella trichopoda HOM05D004991 ORTHO05D006690 9.3e-85 318.5 476 42.2
Cpa.g.sc13.221 Carica papaya HOM05D004991 ORTHO05D006690 9.3e-85 318.5 463 41.5
Aqoxy3G02658 Aquilegia oxysepala HOM05D004991 ORTHO05D006690 1.2e-84 318.2 462 42.0
Thhalv10013222m.g Eutrema salsugineum HOM05D004991 ORTHO05D006690 1.6e-84 317.8 464 41.4
FAN06G1714 Fragaria x ananassa HOM05D004991 ORTHO05D006690 2.1e-84 317.4 434 42.6
BraSC35t46003Z Brassica rapa HOM05D004991 ORTHO05D006690 2.7e-84 317.0 521 38.6
Glyma.20G198600 Glycine max HOM05D004991 ORTHO05D006690 2.7e-84 317.0 502 40.0
BraA03t10918Z Brassica rapa HOM05D004991 ORTHO05D006690 3.5e-84 316.6 493 39.8
BcaC01g06096 Brassica carinata HOM05D004991 ORTHO05D006690 4.6e-84 316.2 493 39.8
BcaC04g20727 Brassica carinata HOM05D004991 ORTHO05D006690 4.6e-84 316.2 479 39.9
C03p19160 Brassica napus HOM05D004991 ORTHO05D006690 4.6e-84 316.2 493 39.8
BolC3t14304H Brassica oleracea HOM05D004991 ORTHO05D006690 4.6e-84 316.2 493 39.8
BolC9t56883H Brassica oleracea HOM05D004991 ORTHO05D006690 4.6e-84 316.2 479 39.9
Gorai.006G273700 Gossypium raimondii HOM05D004991 ORTHO05D006690 4.6e-84 316.2 533 37.9
THA.LOC104811541 Tarenaya hassleriana HOM05D004991 ORTHO05D006690 6.0e-84 315.8 472 41.3
HanXRQChr09g0252201 Helianthus annuus HOM05D004991 ORTHO05D006690 7.8e-84 315.5 476 41.2
Aa31LG3G7660 Aethionema arabicum HOM05D004991 ORTHO05D006690 1.0e-83 315.1 465 41.3
A10p07970 Brassica napus HOM05D004991 ORTHO05D006690 1.0e-83 315.1 478 40.4
Ca_09787_v3 Cicer arietinum L. HOM05D004991 ORTHO05D006690 1.0e-83 315.1 468 40.6
Gohir.D07G049050 Gossypium hirsutum HOM05D004991 ORTHO05D006690 1.0e-83 315.1 468 40.6
Gorai.001G052200 Gossypium raimondii HOM05D004991 ORTHO05D006690 1.0e-83 315.1 468 40.6
Sp6g13360 Schrenkiella parvula HOM05D004991 ORTHO05D006690 1.0e-83 315.1 465 41.3
AL8G25410 Arabidopsis lyrata HOM05D004991 ORTHO05D006690 1.3e-83 314.7 481 41.2
Oeu030873.1 Olea europaea HOM05D004991 ORTHO05D006690 1.3e-83 314.7 502 40.6
C09p39840 Brassica napus HOM05D004991 ORTHO05D006690 1.7e-83 314.3 479 39.7
Sed0023274 Sechium edule HOM05D004991 ORTHO05D006690 1.7e-83 314.3 474 40.1
AT5G51150 Arabidopsis thaliana HOM05D004991 ORTHO05D006690 3.0e-83 313.5 481 41.0
BcaC01g06078 Brassica carinata HOM05D004991 ORTHO05D006690 3.0e-83 313.5 524 38.4
Phvul.L001785 Phaseolus vulgaris HOM05D004991 ORTHO05D006690 3.0e-83 313.5 506 40.3
BcaB08g35470 Brassica carinata HOM05D004991 ORTHO05D006690 8.7e-83 312.0 478 40.0
MELO3C005445.2 Cucumis melo HOM05D004991 ORTHO05D006690 2.1e-81 307.4 431 41.5
AUR62010468 Chenopodium quinoa HOM05D004991 ORTHO05D006690 3.6e-81 306.6 453 40.2
CsaV3_5G005110 Cucumis sativus L. HOM05D004991 ORTHO05D006690 1.8e-80 304.3 462 40.7
Duzib084G1450 Durio zibethinus HOM05D004991 ORTHO05D006690 1.7e-78 297.7 511 37.0
ClCG01G004880 Citrullus lanatus HOM05D004991 ORTHO05D006690 2.2e-78 297.4 460 38.9
Hund11017 Selenicereus undatus HOM05D004991 ORTHO05D006690 8.7e-75 285.4 459 39.9
unitig_46.g18758 Utricularia gibba HOM05D004991 ORTHO05D006690 2.8e-73 280.4 483 37.7
CSS0004669 Camellia sinensis var. sinensis HOM05D004991 ORTHO05D006690 1.3e-70 271.6 365 42.2
SEGI_24268 Sequoiadendron giganteum HOM05D004991 ORTHO05D006690 6.4e-70 269.2 366 42.1
Gohir.D09G249400 Gossypium hirsutum HOM05D004991 ORTHO05D006690 2.5e-66 257.3 419 38.4
vmacro09929 Vaccinium macrocarpon HOM05D004991 ORTHO05D006690 1.3e-62 245.0 534 34.3
Mapoly0001s0004 Marchantia polymorpha HOM05D004991 ORTHO05D006690 2.9e-62 243.8 398 41.7
Nitab4.5_0002293g0040 Nicotiana tabacum HOM05D004991 ORTHO05D006690 3.8e-62 243.4 396 39.6
Mapoly0175s0021 Marchantia polymorpha HOM05D004991 ORTHO05D006690 7.1e-61 239.2 363 42.7
SGA_v2.0_scaffold60G20847 Striga asiatica HOM05D004991 ORTHO05D006690 1.3e-59 235.0 559 33.1
Solyc03g093990.4 Solanum lycopersicum HOM05D004991 ORTHO05D006690 3.0e-59 233.8 344 40.4
Sed0002589 Sechium edule HOM05D004991 ORTHO05D006690 8.7e-59 232.3 356 40.2
MCO05G049 Micromonas commoda HOM05D004991 ORTHO05D006690 3.3e-50 203.8 481 30.8
Duzib205G0755 Durio zibethinus HOM05D004991 ORTHO05D006690 7.4e-50 202.6 379 38.0
Sc17g0004550 Simmondsia chinensis HOM05D004991 ORTHO05D006690 8.2e-49 199.1 358 39.1
CiPaw.08G042700 Carya illinoinensis HOM05D004991 ORTHO05D006690 1.5e-47 194.9 168 56.0
HPP92_022111 Vanilla planifolia HOM05D004991 ORTHO05D006690 3.8e-46 190.3 201 50.7
Gohir.A07G044600 Gossypium hirsutum HOM05D004991 ORTHO05D006690 5.0e-46 189.9 208 45.7
CARHR256900 Cardamine hirsuta HOM05D004991 ORTHO05D006690 1.1e-45 188.7 168 56.5
Aqoxy180s002 Aquilegia oxysepala HOM05D004991 ORTHO05D006690 1.4e-45 188.3 155 58.7
Actinidia31763 Actinidia chinensis HOM05D004991 ORTHO05D006690 1.8e-43 181.4 199 51.8
Os07g0494900 Oryza sativa ssp. japonica HOM05D004991 ORTHO05D006690 2.8e-41 174.1 169 53.8
SalBow3G1983 Salvia bowleyana HOM05D004991 ORTHO05D006690 6.9e-40 169.5 230 41.7
Aqoxy180s003 Aquilegia oxysepala HOM05D004991 ORTHO05D006690 5.9e-39 166.4 189 49.7
Hma1.2p1_0502F.1_g167960 Hydrangea macrophylla HOM05D004991 ORTHO05D035817 7.7e-31 139.4 165 49.7
FAN06G2940 Fragaria x ananassa HOM05D004991 ORTHO05D035817 8.2e-25 119.4 145 47.6
FAN06G3183 Fragaria x ananassa HOM05D004991 ORTHO05D035817 8.2e-25 119.4 145 47.6
Glyma.02G174600 Glycine max HOM05D004991 ORTHO05D006690 1.1e-24 119.0 137 48.9
CAN.G141.10 Capsicum annuum HOM05D014572 ORTHO05D016880 2.3e-11 74.7 68 48.5
FAN06G4210 Fragaria x ananassa HOM05D004991 ORTHO05D020246 3.7e-09 67.4 76 46.1
FAN06G0285 Fragaria x ananassa HOM05D004991 ORTHO05D020246 4.1e-08 63.9 58 53.4
CSS0009087 Camellia sinensis var. sinensis HOM05D004991 ORTHO05D020246 2.0e-07 61.6 55 56.4
Sed0012063 Sechium edule HOM05D005003 ORTHO05D006220 2.3e-06 58.2 337 19.6


User provided reference genes

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