Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 1.3e-141 506.5 279 100.0
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.3e-45 186.8 261 41.0
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.1e-44 184.5 256 39.1
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 1.9e-44 183.7 253 40.7
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 2.5e-44 183.3 255 39.6
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 2.5e-44 183.3 256 38.7
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 2.5e-44 183.3 252 39.3
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 3.2e-44 183.0 255 41.2
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 7.2e-44 181.8 253 39.5
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 7.2e-44 181.8 252 38.5
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.6e-43 180.6 256 41.0
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 4.7e-43 179.1 254 39.0
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 4.7e-43 179.1 256 38.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 6.1e-43 178.7 255 38.4
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 6.1e-43 178.7 253 41.1
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 8.0e-43 178.3 253 39.1
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 1.4e-42 177.6 251 39.4
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.8e-42 177.2 264 36.7
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 5.2e-42 175.6 255 38.4
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 6.8e-42 175.3 257 37.4
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.8e-42 175.3 252 37.7
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 6.8e-42 175.3 256 39.1
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 8.8e-42 174.9 255 38.8
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-41 174.5 253 37.9
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.2e-41 174.5 252 39.7
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.5e-41 174.1 252 37.3
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 1.5e-41 174.1 252 39.7
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 2.0e-41 173.7 265 38.1
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 2.6e-41 173.3 260 38.5
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 2.6e-41 173.3 256 38.7
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 2.6e-41 173.3 254 38.2
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 2.6e-41 173.3 253 38.3
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 3.4e-41 172.9 254 36.6
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 4.4e-41 172.6 256 39.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 5.7e-41 172.2 254 36.2
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 5.7e-41 172.2 255 36.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 7.5e-41 171.8 252 36.5
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 9.8e-41 171.4 260 36.2
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 1.3e-40 171.0 252 37.7
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.7e-40 170.6 253 39.1
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 2.2e-40 170.2 250 37.6
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 3.7e-40 169.5 256 37.1
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 4.9e-40 169.1 256 38.3
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 4.9e-40 169.1 256 37.9
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 8.3e-40 168.3 256 38.7
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 8.3e-40 168.3 262 36.3
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.1e-39 167.9 257 37.4
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.4e-39 167.5 255 37.3
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.4e-39 167.5 256 38.7
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.8e-39 167.2 259 37.1
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 1.8e-39 167.2 253 36.4
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 1.8e-39 167.2 253 36.4
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 2.4e-39 166.8 252 37.3
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 2.4e-39 166.8 254 38.2
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.4e-39 166.8 255 36.5
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 3.1e-39 166.4 253 38.3
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 4.1e-39 166.0 254 37.0
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 5.4e-39 165.6 256 37.5
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 7.0e-39 165.2 254 37.0
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 9.2e-39 164.9 256 37.5
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 1.2e-38 164.5 253 36.8
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.6e-38 164.1 259 36.3
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 1.6e-38 164.1 254 36.6
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 2.0e-38 163.7 255 35.7
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.0e-38 163.7 253 37.2
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.7e-38 163.3 253 36.4
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.7e-38 163.3 254 37.8
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 3.5e-38 162.9 256 36.7
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 4.5e-38 162.5 261 36.4
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 5.9e-38 162.2 258 37.2
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.9e-38 162.2 254 37.0
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 7.8e-38 161.8 253 35.2
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.8e-38 161.8 253 35.2
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.0e-37 161.4 253 35.6
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.0e-37 161.4 253 35.2
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.3e-37 161.0 265 35.5
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.3e-37 161.0 256 37.5
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.7e-37 160.6 251 37.5
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.3e-37 160.2 258 35.7
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 2.9e-37 159.8 245 38.0
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 3.8e-37 159.5 253 36.4
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 3.8e-37 159.5 253 36.4
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 4.3e-36 156.0 245 37.6
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 7.3e-36 155.2 249 36.9
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 9.5e-36 154.8 267 34.1
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.6e-35 154.1 278 34.5
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 4.7e-35 152.5 249 34.9
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.4e-34 151.0 244 37.3
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 1.4e-34 151.0 254 36.6
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.3e-34 150.2 244 36.9
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.3e-34 150.2 261 34.1
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 3.0e-34 149.8 244 36.9
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.0e-34 149.8 265 34.7
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.2e-31 138.3 254 31.9
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.0e-29 134.8 252 33.7
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 8.0e-27 125.2 149 40.3
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 6.8e-26 122.1 168 39.3
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 6.8e-26 122.1 173 38.7
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 2.9e-24 116.7 165 36.4
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 8.3e-24 115.2 165 41.2
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 8.3e-24 115.2 173 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.1e-23 114.8 149 43.0
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.9e-23 114.0 148 40.5
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.9e-23 114.0 151 37.7
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.9e-23 114.0 151 37.7
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.4e-23 113.6 149 36.9
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.4e-23 112.5 147 40.1
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 5.4e-23 112.5 149 43.0
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 5.0e-21 105.9 150 40.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.1e-20 104.8 103 47.6
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.6e-20 102.4 148 39.9
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 3.6e-19 99.8 112 41.1
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.5e-17 94.4 135 35.6
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 4.4e-17 92.8 168 32.1
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 4.6e-14 82.8 146 32.2
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-12 78.2 136 33.1
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.1e-12 78.2 115 35.7
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 9.5e-12 75.1 155 36.1
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.1e-11 73.9 108 35.2
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 8.1e-11 72.0 108 34.3
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.1e-10 71.6 67 43.3
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.8e-10 70.9 108 33.3
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.4e-10 70.5 108 35.2
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 6.8e-10 68.9 66 48.5
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.8e-10 68.9 53 52.8
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.8e-10 68.9 53 52.8
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.8e-10 68.9 53 52.8
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.8e-10 68.9 53 52.8
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 6.8e-10 68.9 83 43.4
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 1.5e-09 67.8 118 31.4
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-09 67.4 53 50.9
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 2.6e-09 67.0 85 38.8
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.3e-08 64.7 118 30.5
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.4e-07 61.2 47 51.1
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.4e-07 60.5 44 59.1
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 5.4e-07 59.3 101 35.6
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.1e-07 58.9 47 48.9
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.7e-06 57.0 78 38.5
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.5e-06 56.6 47 46.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 4.6e-06 56.2 44 54.5


User provided reference genes

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