Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g54450 Chara braunii HOM05D000188 ORTHO05D005820 4.5e-55 218.0 139 100.0
Mapoly0048s0059 Marchantia polymorpha HOM05D000188 ORTHO05D005820 9.9e-18 94.0 104 51.0
SEGI_09831 Sequoiadendron giganteum HOM05D000188 ORTHO05D005820 1.2e-15 87.0 83 51.8
SMO174G0214 Selaginella moellendorffii HOM05D000188 ORTHO05D005820 4.6e-15 85.1 65 67.7
PSO675G5913 Papaver somniferum HOM05D000188 ORTHO05D005820 1.3e-14 83.6 87 43.7
Pp3c6_5360 Physcomitrium patens HOM05D000188 ORTHO05D005820 1.7e-14 83.2 68 60.3
PSO541G1917 Papaver somniferum HOM05D000188 ORTHO05D005820 3.0e-14 82.4 89 44.9
GSVIVG01014677001 Vitis vinifera HOM05D000188 ORTHO05D005820 5.1e-14 81.6 102 43.1
CsaV3_6G051830 Cucumis sativus L. HOM05D000188 ORTHO05D005820 8.7e-14 80.9 72 54.2
Haze_01643 Corylus avellana HOM05D000188 ORTHO05D005820 1.5e-13 80.1 73 52.1
Haze_01647 Corylus avellana HOM05D000188 ORTHO05D005820 1.5e-13 80.1 73 52.1
Sed0014594 Sechium edule HOM05D000188 ORTHO05D005820 1.5e-13 80.1 64 56.2
Thecc.02G042000 Theobroma cacao HOM05D000188 ORTHO05D005820 1.5e-13 80.1 101 42.6
SGA_v2.0_scaffold114G31907 Striga asiatica HOM05D000188 ORTHO05D005820 2.5e-13 79.3 64 57.8
AagrBONN_evm.TU.Sc2ySwM_228.2059 Anthoceros agrestis HOM05D000188 ORTHO05D005820 3.3e-13 79.0 67 59.7
Duzib132G1041 Durio zibethinus HOM05D000188 ORTHO05D005820 3.3e-13 79.0 101 41.6
MELO3C023175.2 Cucumis melo HOM05D000188 ORTHO05D005820 4.3e-13 78.6 72 52.8
Cfa005533 Carpinus fangiana HOM05D000188 ORTHO05D005820 5.6e-13 78.2 73 52.1
Gohir.A03G210500 Gossypium hirsutum HOM05D000188 ORTHO05D005820 5.6e-13 78.2 67 53.7
Gohir.D02G232100 Gossypium hirsutum HOM05D000188 ORTHO05D005820 5.6e-13 78.2 67 53.7
HanXRQChr11g0337501 Helianthus annuus HOM05D000188 ORTHO05D005820 5.6e-13 78.2 60 56.7
Lalb_Chr07g0189271 Lupinus albus HOM05D000188 ORTHO05D005820 5.6e-13 78.2 71 47.9
Aqoxy6G00391 Aquilegia oxysepala HOM05D000188 ORTHO05D005820 7.3e-13 77.8 65 52.3
CANSAT01G0244 Cannabis sativa HOM05D000188 ORTHO05D005820 7.3e-13 77.8 83 50.6
Ciclev10000289m.g Citrus clementina HOM05D000188 ORTHO05D005820 7.3e-13 77.8 100 36.0
THA.LOC104820240 Tarenaya hassleriana HOM05D000188 ORTHO05D005820 9.6e-13 77.4 67 50.7
MSTRG.16550 Avicennia marina HOM05D000188 ORTHO05D005820 1.3e-12 77.0 71 52.1
Gorai.005G259800 Gossypium raimondii HOM05D000188 ORTHO05D005820 1.3e-12 77.0 67 53.7
Lsat_1_v5_gn_7_79440 Lactuca sativa HOM05D000188 ORTHO05D005820 2.1e-12 76.3 67 55.2
Phvul.008G162900 Phaseolus vulgaris HOM05D000188 ORTHO05D005820 2.1e-12 76.3 76 46.1
CiPaw.05G041600 Carya illinoinensis HOM05D000188 ORTHO05D005820 2.8e-12 75.9 67 50.7
Glyma.08G077500 Glycine max HOM05D000188 ORTHO05D005820 2.8e-12 75.9 71 47.9
Sabra17G0048400 Salix brachista HOM05D000188 ORTHO05D005820 2.8e-12 75.9 107 42.1
Sabra17G0050100 Salix brachista HOM05D000188 ORTHO05D005820 2.8e-12 75.9 107 42.1
CDE04G0462 Ceratophyllum demersum HOM05D000188 ORTHO05D005820 3.6e-12 75.5 60 58.3
Zm00001eb214930 Zea mays HOM05D000188 ORTHO05D005820 3.6e-12 75.5 60 56.7
Cc02_g22110 Coffea canephora HOM05D000188 ORTHO05D005820 4.8e-12 75.1 68 51.5
PGR142G0377 Punica granatum HOM05D000188 ORTHO05D005820 4.8e-12 75.1 89 47.2
COL.COLO4_17905 Corchorus olitorius HOM05D000188 ORTHO05D005820 6.2e-12 74.7 65 52.3
Hma1.2p1_1712F.1_g298830 Hydrangea macrophylla HOM05D000188 ORTHO05D005820 6.2e-12 74.7 63 54.0
TAR381G0525 Trochodendron aralioides HOM05D000188 ORTHO05D005820 6.2e-12 74.7 83 45.8
Manes.09G064900 Manihot esculenta HOM05D000188 ORTHO05D005820 8.1e-12 74.3 63 52.4
Potri.017G056700 Populus trichocarpa HOM05D000188 ORTHO05D005820 8.1e-12 74.3 60 53.3
HPP92_019359 Vanilla planifolia HOM05D000188 ORTHO05D005820 8.1e-12 74.3 60 55.0
VMungo0251G1433 Vigna mungo HOM05D000188 ORTHO05D005820 1.1e-11 73.9 76 44.7
ATR0584G205 Amborella trichopoda HOM05D000188 ORTHO05D005820 1.4e-11 73.6 71 52.1
Atru.chr6.975 Acer truncatum HOM05D000188 ORTHO05D005820 1.8e-11 73.2 79 44.3
Dinv19342 Davidia involucrata HOM05D000188 ORTHO05D005820 2.4e-11 72.8 68 48.5
FAN07G2807 Fragaria x ananassa HOM05D000188 ORTHO05D005820 2.4e-11 72.8 65 53.8
MD15G1420100 Malus domestica HOM05D000188 ORTHO05D005820 2.4e-11 72.8 60 56.7
MD15G1420400 Malus domestica HOM05D000188 ORTHO05D005820 2.4e-11 72.8 60 56.7
Nn6g35175 Nelumbo nucifera HOM05D000188 ORTHO05D005820 2.4e-11 72.8 61 55.7
Oeu000647.1 Olea europaea HOM05D000188 ORTHO05D005820 2.4e-11 72.8 67 50.7
TAR381G1388 Trochodendron aralioides HOM05D000188 ORTHO05D005820 2.4e-11 72.8 83 43.4
ECA236G2078 Erigeron canadensis HOM05D000188 ORTHO05D005820 3.1e-11 72.4 69 47.8
FvH4_4g11281 Fragaria vesca HOM05D000188 ORTHO05D005820 3.1e-11 72.4 65 53.8
RcHm_v2.0_Chr4g0407481 Rosa chinensis HOM05D000188 ORTHO05D005820 3.1e-11 72.4 65 52.3
Sp7g13870 Schrenkiella parvula HOM05D000188 ORTHO05D005820 3.1e-11 72.4 67 53.7
FAN17G2674 Fragaria x ananassa HOM05D000188 ORTHO05D005820 4.0e-11 72.0 65 52.3
TWI63G0932 Tripterygium wilfordii HOM05D000188 ORTHO05D005820 4.0e-11 72.0 67 47.8
Actinidia33833 Actinidia chinensis HOM05D000188 ORTHO05D005820 6.9e-11 71.2 68 48.5
Glyma.05G122467 Glycine max HOM05D000188 ORTHO05D005820 6.9e-11 71.2 76 42.1
Lj4g0023932 Lotus japonicus HOM05D000188 ORTHO05D005820 6.9e-11 71.2 69 49.3
SHI16849 Sapria himalayana HOM05D000188 ORTHO05D005820 6.9e-11 71.2 60 50.0
vmacro19905 Vaccinium macrocarpon HOM05D000188 ORTHO05D005820 6.9e-11 71.2 59 55.9
arahy.Tifrunner.gnm1.ann1.WDPT5N Arachis hypogaea HOM05D000188 ORTHO05D005820 9.0e-11 70.9 60 50.0
BcaNung00260 Brassica carinata HOM05D000188 ORTHO05D005820 9.0e-11 70.9 64 54.7
Eucgr.E02742 Eucalyptus grandis HOM05D000188 ORTHO05D005820 1.2e-10 70.5 65 53.8
Prupe.1G566100 Prunus persica HOM05D000188 ORTHO05D005820 1.2e-10 70.5 67 50.7
BcaC06g32230 Brassica carinata HOM05D000188 ORTHO05D005820 1.5e-10 70.1 67 52.2
BolC9t59912H Brassica oleracea HOM05D000188 ORTHO05D005820 1.5e-10 70.1 67 52.2
Rhsim05G0184900 Rhododendron simsii HOM05D000188 ORTHO05D005820 1.5e-10 70.1 59 50.8
Peaxi162Scf01290g00247 Petunia axillaris HOM05D000188 ORTHO05D005820 2.0e-10 69.7 60 53.3
PGSC0003DMG402029775 Solanum tuberosum HOM05D000188 ORTHO05D005820 2.0e-10 69.7 60 55.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.0e-10 69.7 60 50.0
arahy.Tifrunner.gnm1.ann1.5NM8YJ Arachis hypogaea HOM05D000188 ORTHO05D005820 2.6e-10 69.3 60 48.3
arahy.Tifrunner.gnm1.ann1.E4N141 Arachis hypogaea HOM05D000188 ORTHO05D005820 2.6e-10 69.3 60 48.3
BcaC09g50255 Brassica carinata HOM05D000188 ORTHO05D005820 2.6e-10 69.3 64 54.7
A01p21960 Brassica napus HOM05D000188 ORTHO05D005820 2.6e-10 69.3 64 54.7
A10p30980 Brassica napus HOM05D000188 ORTHO05D005820 2.6e-10 69.3 67 52.2
C01p27320 Brassica napus HOM05D000188 ORTHO05D005820 2.6e-10 69.3 64 54.7
BolC1t02675H Brassica oleracea HOM05D000188 ORTHO05D005820 2.6e-10 69.3 64 54.7
BraA01t02102Z Brassica rapa HOM05D000188 ORTHO05D005820 2.6e-10 69.3 64 54.7
BraA10t45143Z Brassica rapa HOM05D000188 ORTHO05D005820 2.6e-10 69.3 67 52.2
CARHR290000 Cardamine hirsuta HOM05D000188 ORTHO05D005820 2.6e-10 69.3 80 48.8
TPR.G29922 Trifolium pratense HOM05D000188 ORTHO05D005820 3.4e-10 68.9 82 39.0
Aa31LG9G1850 Aethionema arabicum HOM05D000188 ORTHO05D005820 4.4e-10 68.6 67 47.8
AT4G15570 Arabidopsis thaliana HOM05D000188 ORTHO05D005820 4.4e-10 68.6 64 51.6
CAN.G1702.2 Capsicum annuum HOM05D000188 ORTHO05D005820 4.4e-10 68.6 60 51.7
DCAR_029233 Daucus carota HOM05D000188 ORTHO05D005820 4.4e-10 68.6 93 38.7
Migut.B01093 Erythranthe guttata HOM05D000188 ORTHO05D005820 4.4e-10 68.6 69 53.6
Os03g0440200 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D005820 4.4e-10 68.6 103 38.8
Os04g0424200 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D005820 4.4e-10 68.6 103 38.8
Solyc01g104640.3 Solanum lycopersicum HOM05D000188 ORTHO05D005820 4.4e-10 68.6 60 53.3
Sopen01g047150 Solanum pennellii HOM05D000188 ORTHO05D005820 4.4e-10 68.6 60 53.3
C09p71490 Brassica napus HOM05D000188 ORTHO05D005820 5.8e-10 68.2 67 50.7
AL7G39910 Arabidopsis lyrata HOM05D000188 ORTHO05D005820 7.6e-10 67.8 63 52.4
Thhalv10024423m.g Eutrema salsugineum HOM05D000188 ORTHO05D005820 7.6e-10 67.8 64 53.1
Nitab4.5_0009570g0040 Nicotiana tabacum HOM05D000188 ORTHO05D005820 7.6e-10 67.8 61 52.5
Nitab4.5_0000249g0330 Nicotiana tabacum HOM05D000188 ORTHO05D005820 9.9e-10 67.4 61 52.5
AUR62002160 Chenopodium quinoa HOM05D000188 ORTHO05D005820 1.7e-09 66.6 88 44.3
Hund08241 Selenicereus undatus HOM05D000188 ORTHO05D005820 2.2e-09 66.2 79 43.0
CSS0038654 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D005820 2.9e-09 65.9 68 48.5
Carub.0007s2624 Capsella rubella HOM05D000188 ORTHO05D005820 2.9e-09 65.9 60 53.3
AUR62015550 Chenopodium quinoa HOM05D000188 ORTHO05D005820 3.8e-09 65.5 84 45.2
Medtr1g052700 Medicago truncatula HOM05D000188 ORTHO05D005820 4.9e-09 65.1 65 43.1
Psat6g089240 Pisum sativum HOM05D000188 ORTHO05D005820 4.9e-09 65.1 72 38.9
Medtr5g053930 Medicago truncatula HOM05D000188 ORTHO05D005820 6.4e-09 64.7 80 41.2
FvH4_3g12391 Fragaria vesca HOM05D000188 ORTHO05D005820 8.4e-09 64.3 84 40.5
ClCG04G000310 Citrullus lanatus HOM05D000188 ORTHO05D005820 5.4e-08 61.6 72 47.2
DCAR_029228 Daucus carota HOM05D000188 ORTHO05D005820 1.2e-07 60.5 91 35.2
DCAR_029227 Daucus carota HOM05D000188 ORTHO05D005820 4.6e-07 58.5 60 45.0
EL10Ac3g04985 Beta vulgaris HOM05D000188 ORTHO05D005820 7.9e-07 57.8 42 64.3
Ah.08g217650 Amaranthus hybridus HOM05D000188 ORTHO05D005820 1.3e-06 57.0 43 58.1
Sp1g14940 Schrenkiella parvula HOM05D000188 ORTHO05D007139 3.9e-06 55.5 87 36.8


User provided reference genes

Program Settings